Detailed information    

insolico Bioinformatically predicted

Overview

Name   recQ   Type   Machinery gene
Locus tag   N8I87_RS23430 Genome accession   NZ_CP106798
Coordinates   5067156..5069153 (+) Length   665 a.a.
NCBI ID   WP_263216613.1    Uniprot ID   -
Organism   Streptomyces sp. HUAS 15-9     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 5062156..5074153
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N8I87_RS23420 (N8I87_23420) - 5063741..5065312 (+) 1572 WP_263211452.1 NADH-quinone oxidoreductase subunit M -
  N8I87_RS23425 (N8I87_23425) nuoN 5065309..5066958 (+) 1650 WP_263211454.1 NADH-quinone oxidoreductase subunit NuoN -
  N8I87_RS23430 (N8I87_23430) recQ 5067156..5069153 (+) 1998 WP_263216613.1 DNA helicase RecQ Machinery gene
  N8I87_RS23435 (N8I87_23435) - 5069160..5070098 (-) 939 WP_263211455.1 M56 family metallopeptidase -
  N8I87_RS23440 (N8I87_23440) fahA 5070579..5071799 (-) 1221 WP_263211456.1 fumarylacetoacetase -
  N8I87_RS23445 (N8I87_23445) - 5072032..5073279 (+) 1248 WP_263211457.1 ATP-grasp domain-containing protein -

Sequence

Protein


Download         Length: 665 a.a.        Molecular weight: 72148.76 Da        Isoelectric Point: 5.2078

>NTDB_id=637496 N8I87_RS23430 WP_263216613.1 5067156..5069153(+) (recQ) [Streptomyces sp. HUAS 15-9]
MGGTGGISEMPGATDSEALATLHRVFGYEAFRGEQKEVIEHVVSGGDAVVLMPTGGGKSLCYQIPALVRPGTGVVVSPLI
ALMQDQVDALRALGVNAGFINSTQDFDERRVVEAEFLAGELDLLYLAPERLRLDSTLDLLSRGKVAVFAIDEAHCVSQWG
HDFRPDYLALSVLGERWPDVPRIALTATATRTTHEEITQRLGMPTARHFVASFDRPNIQYRIVPKADPKKQLLAFLRQEH
TGDAGIVYCLSRNSVEKTAEYLSRNGVEAVPYHAGLDAGTRAAHQSRFLREDGLVVVATIAFGMGIDKPDVRFVAHLDLP
KSIEGYYQETGRAGRDGLPSTAWMAYGLNDVIQQRKLIQSGEGDEAFRRRAAAHLDSMLALCETAGCRRGQLLAYFGQDP
EPAGCGNCDTCLTPPETWDGTIAAQKVLSTVVRLQRERGQKFGAVQIVDILLGKRTGKVIQFDHDQLSVFGIGEDLAEGE
WRGVVRQLLAQGLLAVEGEYGTLVLTETSGAVLRREREVPLRKEPKKPAAARTTSSSSGRGERKPKAAVAELPDELLPAF
EALRAWRAEQAREQGVPAYVIFHDATLREIVSRRPGSVAELGTVNGVGEKKLATYGEGVLGVLASMDGPAEATAASPAAT
APATAHAPDEDWPEMDMEPEREDWI

Nucleotide


Download         Length: 1998 bp        

>NTDB_id=637496 N8I87_RS23430 WP_263216613.1 5067156..5069153(+) (recQ) [Streptomyces sp. HUAS 15-9]
ATGGGTGGGACGGGCGGGATCAGCGAGATGCCAGGGGCGACCGACAGCGAGGCGCTGGCCACACTCCACCGGGTCTTCGG
GTACGAGGCCTTCCGCGGTGAGCAGAAAGAGGTCATCGAGCATGTGGTGTCCGGTGGCGACGCCGTCGTCCTCATGCCGA
CCGGCGGCGGAAAGTCGCTGTGCTATCAGATCCCCGCCCTGGTCAGACCCGGTACGGGCGTCGTGGTCTCCCCGCTGATC
GCGCTGATGCAGGACCAGGTCGACGCGCTGCGGGCGCTCGGTGTGAACGCCGGGTTCATCAACTCCACCCAGGACTTCGA
CGAGCGGCGCGTGGTCGAGGCGGAGTTCCTGGCGGGCGAGCTGGACCTGCTGTACCTGGCGCCCGAGCGGCTGCGCCTGG
ACTCCACCCTGGACCTGCTGTCCCGGGGCAAGGTCGCGGTGTTCGCGATCGACGAGGCGCACTGCGTCTCCCAGTGGGGC
CACGACTTCCGCCCCGACTACCTGGCCCTGTCCGTCCTGGGCGAGCGCTGGCCGGACGTCCCGCGGATCGCGCTCACGGC
GACGGCCACCCGGACGACGCACGAGGAGATCACACAGCGCCTGGGTATGCCGACGGCCCGCCACTTCGTGGCGAGCTTCG
ACCGGCCCAACATCCAGTACCGCATCGTGCCCAAGGCCGACCCCAAGAAGCAGCTGCTCGCCTTCCTGCGGCAGGAGCAC
ACGGGCGACGCGGGCATCGTGTACTGCCTCTCGCGGAACTCGGTGGAGAAGACCGCCGAGTATCTGAGCCGCAACGGCGT
GGAGGCGGTGCCCTACCACGCCGGCCTGGACGCGGGTACACGCGCGGCGCACCAGTCCCGGTTCCTGCGCGAGGACGGCC
TGGTCGTGGTGGCGACCATCGCCTTCGGCATGGGCATCGACAAGCCGGACGTACGGTTCGTCGCCCACCTCGACCTGCCC
AAGTCGATCGAGGGCTACTACCAGGAGACGGGCCGCGCCGGCCGTGACGGACTGCCCTCCACGGCCTGGATGGCCTACGG
CCTCAACGATGTCATACAGCAGCGCAAGCTGATCCAGTCCGGCGAGGGCGACGAGGCCTTCCGCCGCCGGGCGGCCGCCC
ACCTCGACTCGATGCTCGCGCTCTGCGAGACGGCCGGCTGCCGTCGCGGCCAGCTGCTTGCCTACTTCGGCCAGGACCCC
GAACCCGCGGGCTGCGGCAACTGCGACACCTGCCTGACCCCTCCGGAGACCTGGGACGGCACGATCGCCGCGCAGAAGGT
GCTGTCGACGGTGGTCAGACTGCAGCGGGAGCGGGGACAGAAGTTCGGCGCCGTGCAGATCGTGGACATCCTGCTCGGGA
AGCGCACCGGCAAGGTGATCCAGTTCGACCACGACCAGCTGTCCGTCTTCGGCATCGGCGAGGACCTGGCCGAGGGCGAA
TGGCGGGGCGTCGTCCGGCAGTTGCTGGCACAGGGGCTGCTCGCGGTCGAGGGGGAGTACGGCACGCTGGTCCTCACCGA
GACGAGCGGGGCGGTGCTGCGGCGGGAGCGGGAGGTGCCGCTGCGCAAGGAGCCCAAGAAGCCGGCCGCCGCGCGCACCA
CGTCGTCCTCGTCCGGCCGGGGTGAGCGCAAGCCCAAGGCCGCCGTGGCCGAGCTGCCCGACGAGCTGCTGCCCGCCTTC
GAGGCGCTGCGTGCCTGGCGCGCCGAACAGGCCCGTGAGCAGGGCGTTCCGGCGTACGTCATCTTCCACGACGCCACGCT
CCGGGAGATCGTCAGCCGTCGGCCCGGCTCGGTGGCCGAGCTGGGCACGGTCAATGGTGTCGGGGAGAAGAAGCTGGCGA
CGTACGGGGAGGGCGTGCTCGGGGTGCTGGCCTCCATGGACGGCCCGGCCGAAGCCACCGCCGCATCCCCGGCCGCCACC
GCACCGGCGACCGCCCACGCCCCGGACGAGGACTGGCCCGAGATGGACATGGAGCCGGAGCGCGAGGACTGGATCTAG

Domains

Predicted by InterProScan.

RecQ zinc-binding (RecQ_Zn_bind)

(349-412)

Helicase conserved C-terminal domain (Helicase_C)

(230-336)

RQC domain (RQC)

(414-528)

DEAD/DEAH box helicase (DEAD)

(35-193)

HRDC domain (HRDC)

(559-622)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recQ Bacillus subtilis subsp. subtilis str. 168

39.604

91.128

0.361