Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoS   Type   Regulator
Locus tag   N8I87_RS17075 Genome accession   NZ_CP106798
Coordinates   3741204..3742202 (-) Length   332 a.a.
NCBI ID   WP_263209749.1    Uniprot ID   -
Organism   Streptomyces sp. HUAS 15-9     
Function   regulation of chitinases (predicted from homology)   
Competence regulation

Genomic Context

Location: 3736204..3747202
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N8I87_RS17055 (N8I87_17055) - 3736393..3737154 (-) 762 WP_263209743.1 DeoR/GlpR family DNA-binding transcription regulator -
  N8I87_RS17060 (N8I87_17060) - 3737332..3738876 (-) 1545 WP_263209745.1 MFS transporter -
  N8I87_RS17065 (N8I87_17065) - 3738939..3739904 (+) 966 WP_263209747.1 helix-turn-helix transcriptional regulator -
  N8I87_RS17070 (N8I87_17070) - 3739944..3740696 (-) 753 WP_317633470.1 TetR/AcrR family transcriptional regulator -
  N8I87_RS17075 (N8I87_17075) rpoS 3741204..3742202 (-) 999 WP_263209749.1 RNA polymerase sigma factor RpoD/SigA Regulator
  N8I87_RS17080 (N8I87_17080) - 3742402..3742920 (+) 519 WP_263209750.1 GNAT family N-acetyltransferase -
  N8I87_RS17085 (N8I87_17085) - 3742959..3743750 (-) 792 WP_263209752.1 dioxygenase -
  N8I87_RS17090 (N8I87_17090) - 3743868..3744377 (+) 510 WP_263209754.1 MarR family winged helix-turn-helix transcriptional regulator -
  N8I87_RS17095 (N8I87_17095) - 3744479..3746017 (-) 1539 WP_263209756.1 MFS transporter -
  N8I87_RS17100 (N8I87_17100) - 3746252..3746905 (-) 654 WP_263209758.1 TetR/AcrR family transcriptional regulator -

Sequence

Protein


Download         Length: 332 a.a.        Molecular weight: 37029.75 Da        Isoelectric Point: 4.9682

>NTDB_id=637480 N8I87_RS17075 WP_263209749.1 3741204..3742202(-) (rpoS) [Streptomyces sp. HUAS 15-9]
MATRAVARRQSATGETADVASSVRAHGGEIADRDLVGMYLDEIARTPLLDAAKEVELSQTIEAGVFARQVLDGCEESATD
ASREELEALVAAGERAKDIFIRSNLRLVVAVARRYPRSGLPLLDLIQEGNAGLVRAVEKFDYRKGFKFSTYATWWIRQAI
TRSIADQSRTIRLPVHLVEELGRIRRVQREFNREHGREPEPAEIAAELGSTPERVTDVLDWARDPVSLNMGVDDEGETQF
GDLLEDTSAVSPEQSVLTLLRSEELDGLIGRLDQRTASIIKMRYGIEDGRERTLTEVGKEHGLTRERIRQIEKHALLELK
KLARDTGFDAVA

Nucleotide


Download         Length: 999 bp        

>NTDB_id=637480 N8I87_RS17075 WP_263209749.1 3741204..3742202(-) (rpoS) [Streptomyces sp. HUAS 15-9]
ATGGCAACCCGTGCCGTCGCCCGTCGTCAGTCCGCCACCGGCGAGACGGCCGACGTGGCAAGCAGTGTTCGCGCCCATGG
CGGCGAGATCGCCGACCGCGACCTGGTCGGCATGTATCTCGACGAGATCGCGCGCACACCGCTGCTCGACGCCGCCAAGG
AGGTCGAGCTGTCCCAGACCATCGAAGCGGGTGTGTTCGCGCGACAGGTCCTCGACGGATGTGAGGAGTCCGCCACGGAC
GCCAGCCGCGAGGAACTCGAGGCGCTGGTCGCCGCGGGGGAGCGAGCCAAGGACATCTTCATCCGCTCCAACCTCCGGCT
GGTCGTGGCGGTGGCCCGGCGCTATCCGCGCAGCGGCCTGCCCCTGCTGGACCTGATCCAGGAGGGCAACGCCGGCCTGG
TGCGCGCGGTGGAGAAGTTCGACTACCGCAAGGGCTTCAAGTTCTCCACGTACGCCACCTGGTGGATCCGCCAGGCGATC
ACCCGCTCGATAGCCGACCAGTCCCGCACGATCCGACTGCCCGTCCACCTGGTGGAGGAGCTCGGCCGGATCCGCCGCGT
GCAGCGCGAGTTCAACCGTGAGCACGGGCGCGAGCCCGAGCCCGCGGAGATCGCCGCCGAGCTCGGCTCCACCCCGGAGC
GCGTGACCGACGTGCTGGACTGGGCCCGTGACCCGGTCTCGCTGAACATGGGGGTGGACGACGAGGGCGAGACCCAGTTC
GGCGACCTGTTGGAGGACACCTCGGCGGTCTCCCCCGAGCAGTCGGTCCTCACGCTCCTGCGCAGCGAGGAGTTGGACGG
GCTGATCGGCCGGCTCGACCAGCGCACGGCCTCCATCATCAAGATGAGGTACGGCATCGAGGACGGCCGGGAGCGCACGC
TCACCGAGGTCGGCAAGGAACACGGGCTGACGCGCGAACGCATCCGCCAGATCGAGAAGCACGCGCTGCTCGAGCTGAAG
AAGCTGGCGCGCGACACCGGGTTCGACGCGGTGGCGTAG

Domains

Predicted by InterProScan.

Sigma-70 region 3 (Sigma70_r3)

(179-255)

Sigma-70 factor, region 1.2 (Sigma70_r1_2)

(34-67)

Sigma-70 region 2 (Sigma70_r2)

(100-169)

Sigma-70, region 4 (Sigma70_r4)

(269-321)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoS Vibrio cholerae O1 biovar El Tor strain E7946

40.468

90.06

0.364