Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGD   Type   Machinery gene
Locus tag   LUZ02_RS13305 Genome accession   NZ_CP089491
Coordinates   2718394..2718840 (+) Length   148 a.a.
NCBI ID   WP_075583651.1    Uniprot ID   -
Organism   Staphylococcus aureus strain 0242_IV_ST30     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2713394..2723840
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LUZ02_RS13270 - 2713888..2714091 (+) 204 WP_000087561.1 YqgQ family protein -
  LUZ02_RS13275 - 2714088..2715074 (+) 987 WP_000161315.1 ROK family glucokinase -
  LUZ02_RS13280 - 2715074..2715403 (+) 330 WP_001018871.1 MTH1187 family thiamine-binding protein -
  LUZ02_RS13285 - 2715400..2716023 (+) 624 WP_001223006.1 MBL fold metallo-hydrolase -
  LUZ02_RS13290 comGA 2716075..2717049 (+) 975 WP_000697215.1 competence type IV pilus ATPase ComGA Machinery gene
  LUZ02_RS13295 comGB 2717021..2718091 (+) 1071 WP_000776403.1 competence type IV pilus assembly protein ComGB Machinery gene
  LUZ02_RS13300 comGC 2718105..2718416 (+) 312 WP_000472256.1 competence type IV pilus major pilin ComGC Machinery gene
  LUZ02_RS13305 comGD 2718394..2718840 (+) 447 WP_075583651.1 competence type IV pilus minor pilin ComGD Machinery gene
  LUZ02_RS13310 comGE 2718827..2719126 (+) 300 WP_000844413.1 hypothetical protein Machinery gene
  LUZ02_RS13315 comGF 2719044..2719541 (+) 498 WP_029697681.1 competence type IV pilus minor pilin ComGF Machinery gene
  LUZ02_RS13320 - 2719638..2719784 (+) 147 WP_001789879.1 hypothetical protein -
  LUZ02_RS13325 - 2719774..2720298 (+) 525 WP_001015122.1 shikimate kinase -
  LUZ02_RS13330 gcvT 2720457..2721548 (+) 1092 WP_000093355.1 glycine cleavage system aminomethyltransferase GcvT -
  LUZ02_RS13335 gcvPA 2721568..2722914 (+) 1347 WP_000019688.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPA -

Sequence

Protein


Download         Length: 148 a.a.        Molecular weight: 17113.28 Da        Isoelectric Point: 10.3312

>NTDB_id=637453 LUZ02_RS13305 WP_075583651.1 2718394..2718840(+) (comGD) [Staphylococcus aureus strain 0242_IV_ST30]
MEKQLQIRKQSAFTMIEILVVMMLISIFLLLTMTSKGLSNLRVIDDEANIISLITELNYIKSQAIANQGYINVRFYENSD
TIKVIENNKIRFLKLKVGKIINVAKVDIIAFDKKGNINKFGSITIDNNNSIYRIIFHIEKGRIRYEKL

Nucleotide


Download         Length: 447 bp        

>NTDB_id=637453 LUZ02_RS13305 WP_075583651.1 2718394..2718840(+) (comGD) [Staphylococcus aureus strain 0242_IV_ST30]
ATGGAGAAGCAGTTGCAAATTAGAAAGCAGTCAGCATTTACTATGATTGAGATACTTGTGGTAATGATGTTAATCAGTAT
ATTTTTACTTTTGACAATGACATCTAAAGGATTAAGCAATCTTAGAGTAATAGATGACGAGGCAAATATCATTTCTCTTA
TTACTGAATTGAATTATATTAAATCGCAAGCTATAGCAAATCAAGGATATATCAATGTTAGATTTTATGAAAACAGTGAC
ACTATTAAAGTAATAGAGAATAATAAAATACGATTTCTAAAATTAAAAGTAGGCAAAATAATTAATGTTGCAAAAGTTGA
TATTATTGCCTTTGATAAAAAAGGGAATATCAATAAATTTGGTAGCATAACAATTGACAATAACAATTCAATTTATAGAA
TAATATTCCATATTGAAAAAGGAAGAATTCGTTATGAAAAGCTATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(8-31)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGD Staphylococcus aureus MW2

98.649

100

0.986
  comGD Staphylococcus aureus N315

98.649

100

0.986