Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGF   Type   Machinery gene
Locus tag   LUY94_RS02590 Genome accession   NZ_CP089485
Coordinates   482967..483464 (+) Length   165 a.a.
NCBI ID   WP_001789864.1    Uniprot ID   -
Organism   Staphylococcus aureus strain E1139_IV_ST45     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 477967..488464
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LUY94_RS02550 - 478012..478998 (+) 987 WP_000161314.1 ROK family glucokinase -
  LUY94_RS02555 - 478998..479327 (+) 330 WP_001018871.1 MTH1187 family thiamine-binding protein -
  LUY94_RS02560 - 479324..479947 (+) 624 WP_001223008.1 MBL fold metallo-hydrolase -
  LUY94_RS02565 comGA 479998..480972 (+) 975 WP_000697228.1 competence type IV pilus ATPase ComGA Machinery gene
  LUY94_RS02570 comGB 480944..482014 (+) 1071 WP_000775708.1 competence type IV pilus assembly protein ComGB Machinery gene
  LUY94_RS02575 comGC 482028..482339 (+) 312 WP_000472256.1 competence type IV pilus major pilin ComGC Machinery gene
  LUY94_RS02580 comGD 482317..482763 (+) 447 WP_001790850.1 competence type IV pilus minor pilin ComGD Machinery gene
  LUY94_RS02585 comGE 482750..483049 (+) 300 WP_000844413.1 hypothetical protein Machinery gene
  LUY94_RS02590 comGF 482967..483464 (+) 498 WP_001789864.1 competence type IV pilus minor pilin ComGF Machinery gene
  LUY94_RS02595 - 483561..483707 (+) 147 WP_001789879.1 hypothetical protein -
  LUY94_RS02600 - 483697..484221 (+) 525 WP_001015117.1 shikimate kinase -
  LUY94_RS02605 gcvT 484380..485471 (+) 1092 WP_000093349.1 glycine cleavage system aminomethyltransferase GcvT -
  LUY94_RS02610 gcvPA 485491..486837 (+) 1347 WP_000019687.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPA -
  LUY94_RS02615 gcvPB 486830..488302 (+) 1473 WP_000202189.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPB -

Sequence

Protein


Download         Length: 165 a.a.        Molecular weight: 19164.88 Da        Isoelectric Point: 10.2192

>NTDB_id=637299 LUY94_RS02590 WP_001789864.1 482967..483464(+) (comGF) [Staphylococcus aureus strain E1139_IV_ST45]
MILSKVTNKFVLFQKIPLLIKRHVYSINVKAFSLIEMLVAMMVISITLLIVPDLIRLSKTFLIESRDLTTVDFEFFSRDI
LDDFKGVDRNDIEIRQHRIILHKGEEMIEYKLINNKIIKVVNDRGNITMINNVTAFTANIYYKSIIKITITVKVGTNVQT
KTIYV

Nucleotide


Download         Length: 498 bp        

>NTDB_id=637299 LUY94_RS02590 WP_001789864.1 482967..483464(+) (comGF) [Staphylococcus aureus strain E1139_IV_ST45]
ATGATATTAAGCAAAGTGACCAACAAATTTGTGCTATTTCAAAAAATACCACTTCTTATCAAAAGACATGTATACAGTAT
TAATGTCAAAGCTTTTTCGCTCATTGAAATGTTAGTAGCGATGATGGTTATAAGTATAACTTTACTAATTGTTCCAGACT
TAATTAGACTTAGTAAAACTTTTCTAATTGAAAGTAGGGATTTAACAACTGTAGATTTCGAATTTTTCTCAAGAGATATT
CTAGATGATTTTAAAGGAGTAGATAGAAACGATATTGAAATTAGGCAACACCGTATCATTTTACATAAAGGTGAAGAAAT
GATCGAATACAAATTAATTAATAATAAAATTATTAAAGTTGTAAATGACAGAGGAAATATAACAATGATTAATAATGTTA
CAGCATTTACTGCAAATATCTACTATAAATCCATTATTAAAATAACGATAACAGTTAAAGTCGGTACAAATGTGCAGACT
AAAACTATTTATGTATAA

Domains

Predicted by InterproScan.

Putative Competence protein ComGF (ComGF)

(67-155)

Prokaryotic N-terminal methylation motif (N_methyl)

(28-51)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGF Staphylococcus aureus MW2

100

100

1
  comGF Staphylococcus aureus N315

96.364

100

0.964