Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   LUY97_RS14310 Genome accession   NZ_CP089483
Coordinates   2845017..2845412 (+) Length   131 a.a.
NCBI ID   WP_000932694.1    Uniprot ID   -
Organism   Staphylococcus aureus strain 0104_III_ST239     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2840017..2850412
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LUY97_RS14280 - 2841275..2841679 (+) 405 WP_001094394.1 F0F1 ATP synthase subunit epsilon -
  LUY97_RS14285 - 2842017..2842109 (+) 93 WP_001790611.1 hypothetical protein -
  LUY97_RS14290 - 2842241..2842474 (+) 234 WP_000384523.1 DUF1146 family protein -
  LUY97_RS14295 murA 2842585..2843850 (+) 1266 WP_000358000.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  LUY97_RS14300 fabZ 2843884..2844324 (+) 441 WP_000447678.1 3-hydroxyacyl-ACP dehydratase FabZ -
  LUY97_RS14305 - 2844383..2844823 (-) 441 WP_000846746.1 YwpF-like family protein -
  LUY97_RS14310 ssb 2845017..2845412 (+) 396 WP_000932694.1 single-stranded DNA-binding protein Machinery gene
  LUY97_RS14315 sceD 2845801..2846496 (+) 696 WP_000752008.1 lytic transglycosylase SceD -
  LUY97_RS14320 tenA 2846882..2847571 (+) 690 WP_000396077.1 thiaminase II -
  LUY97_RS14325 thiD 2847564..2848394 (+) 831 WP_000594959.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  LUY97_RS14330 thiM 2848378..2849169 (+) 792 WP_001108479.1 hydroxyethylthiazole kinase -
  LUY97_RS14335 thiE 2849171..2849812 (+) 642 WP_000483153.1 thiamine phosphate synthase -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 15042.09 Da        Isoelectric Point: 5.6824

>NTDB_id=637280 LUY97_RS14310 WP_000932694.1 2845017..2845412(+) (ssb) [Staphylococcus aureus strain 0104_III_ST239]
MLNKIVIVGRLTKDAQIFEKEDRKIATFCVATHRNYKDENGEIVCDYLFCKAFGKLASNIEKYTNQGTLVGITGQMRSRK
YDKDGQTHFVTELYVETIKFMSPKSQNNEILSDSILDIDSQNIDNHDLLEI

Nucleotide


Download         Length: 396 bp        

>NTDB_id=637280 LUY97_RS14310 WP_000932694.1 2845017..2845412(+) (ssb) [Staphylococcus aureus strain 0104_III_ST239]
ATGCTAAATAAAATCGTAATTGTCGGGAGACTGACGAAAGACGCACAAATATTTGAAAAGGAGGATAGAAAAATTGCAAC
GTTTTGTGTTGCAACGCACCGAAATTATAAAGATGAAAATGGAGAAATCGTCTGTGATTACTTATTCTGTAAAGCATTTG
GCAAGTTAGCTTCTAATATAGAAAAATATACTAATCAAGGTACATTGGTTGGTATAACTGGTCAAATGAGATCAAGAAAG
TATGATAAAGACGGACAAACACACTTTGTCACTGAATTATATGTTGAAACAATAAAATTTATGTCCCCTAAATCCCAAAA
TAATGAAATTCTCTCAGATAGTATTTTAGATATTGACTCTCAAAATATAGATAATCATGACTTATTAGAAATTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Staphylococcus aureus N315

100

100

1
  ssb Staphylococcus aureus MW2

99.237

100

0.992