Detailed information NTG0637136

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: N9J97_RS07050
• Genome accession: NZ_CP106784
• Coordinates: 1499418..1500422 (+)
• Length: 334 a.a.
• NCBI ID: WP_003113871.1
• Uniprot ID: A0A0H2ZEU1
• Organism: Pseudomonas aeruginosa strain NY5085
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1494418..1505422

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
N9J97_RS07020 (N9J97_07020)	fghA	1494510..1495361 (+)	852	WP_023116357.1	S-formylglutathione hydrolase	-
N9J97_RS07025 (N9J97_07025)	ispF	1495432..1495905 (+)	474	WP_003098560.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
N9J97_RS07030 (N9J97_07030)	truD	1495902..1496969 (+)	1068	WP_023104619.1	tRNA pseudouridine(13) synthase TruD	-
N9J97_RS07035 (N9J97_07035)	surE	1496957..1497706 (+)	750	WP_003092341.1	5'/3'-nucleotidase SurE	-
N9J97_RS07040 (N9J97_07040)	-	1497739..1498374 (+)	636	WP_003098558.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
N9J97_RS07045 (N9J97_07045)	-	1498420..1499313 (+)	894	WP_003143263.1	peptidoglycan DD-metalloendopeptidase family protein	-
N9J97_RS07050 (N9J97_07050)	rpoS	1499418..1500422 (+)	1005	WP_003113871.1	RNA polymerase sigma factor RpoS	Regulator
N9J97_RS07055 (N9J97_07055)	fdxA	1500849..1501172 (-)	324	WP_003119354.1	ferredoxin FdxA	-
N9J97_RS07060 (N9J97_07060)	mutS	1501239..1503818 (-)	2580	WP_203305954.1	DNA mismatch repair protein MutS	-
N9J97_RS07065 (N9J97_07065)	-	1503878..1504852 (-)	975	WP_014602574.1	tyrosine-type recombinase/integrase	-
N9J97_RS07070 (N9J97_07070)	-	1504862..1505071 (-)	210	WP_071538228.1	DUF4224 domain-containing protein	-

Sequence

Protein

• Length: 334 a.a.
• Molecular weight: 38235.38 Da
• Isoelectric Point: 5.0478

>NTDB_id=637136 N9J97_RS07050 WP_003113871.1 1499418..1500422(+) (rpoS) [Pseudomonas aeruginosa strain NY5085]
MALKKEGPEFDHDDEVLLLEPGIMLDESSADEQPSPRATPKATTSFSSKQHKHIDYTRALDATQLYLNEIGFSPLLTPEE
EVHFARLAQKGDPAGRKRMIESNLRLVVKIARRYVNRGLSLLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIE
RAIMNQTRTIRLPIHVVKELNVYLRAARELTHKLDHEPSPEEIANLLEKPVAEVKRMLGLNERVTSVDVSLGPDSDKTLL
DTLTDDRPTDPCELLQDDDLSESIDQWLTELTDKQREVVIRRFGLRGHESSTLEEVGQEIGLTRERVRQIQVEALKRLRE
ILEKNGLSSDALFQ

Nucleotide

• Length: 1005 bp

>NTDB_id=637136 N9J97_RS07050 WP_003113871.1 1499418..1500422(+) (rpoS) [Pseudomonas aeruginosa strain NY5085]
ATGGCACTCAAAAAAGAAGGGCCGGAGTTTGACCACGATGATGAAGTGCTCCTCCTGGAGCCCGGCATCATGCTGGACGA
GTCGTCTGCCGACGAGCAGCCTTCTCCCCGGGCAACTCCAAAAGCCACCACTTCCTTCTCTTCCAAACAACACAAGCACA
TCGACTACACGCGCGCGTTGGACGCAACGCAGCTGTATCTCAACGAAATCGGTTTCTCGCCCCTGTTGACGCCCGAAGAG
GAAGTCCACTTCGCTCGTCTGGCGCAGAAGGGCGATCCCGCTGGTCGGAAGCGGATGATCGAGAGCAACCTGCGGTTGGT
GGTGAAGATCGCCCGGCGCTATGTCAATCGCGGACTGTCCCTGCTCGACCTGATCGAGGAAGGCAACCTAGGCCTGATCC
GCGCCGTGGAGAAGTTCGATCCGGAGCGCGGATTCCGGTTCTCGACCTACGCCACCTGGTGGATCCGCCAGACCATCGAG
CGGGCCATCATGAACCAGACCCGGACCATTCGCTTGCCGATCCATGTGGTCAAGGAGCTCAACGTCTACCTGCGTGCGGC
GCGGGAACTGACCCACAAGCTCGACCACGAACCTTCACCCGAAGAAATCGCCAACCTGCTGGAGAAGCCGGTCGCCGAGG
TCAAGCGCATGCTCGGCCTGAACGAACGGGTGACTTCGGTGGACGTCTCTCTTGGTCCGGACTCGGACAAGACCCTGCTG
GATACGCTCACCGACGATCGCCCCACCGACCCGTGCGAGCTGCTGCAGGATGACGATCTCAGCGAAAGCATCGACCAGTG
GCTGACGGAACTCACCGACAAGCAGCGTGAGGTGGTGATTCGCCGCTTCGGCTTGCGCGGGCACGAAAGCAGCACGCTGG
AAGAGGTCGGCCAGGAAATCGGCCTGACCCGCGAGCGGGTTCGTCAGATCCAGGTCGAGGCGCTGAAGCGCCTGCGGGAG
ATTCTGGAGAAGAATGGCCTGTCGAGTGACGCGCTGTTCCAGTGA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (179-253)

• Sigma-70 region 2 (Sigma70_r2) (99-168)

• Sigma-70, region 4 (Sigma70_r4) (267-320)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (61-94)

3D structure

• AlphaFold DB: A0A0H2ZEU1

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	66.463	98.204	0.653