Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   N9J97_RS02145 Genome accession   NZ_CP106784
Coordinates   455645..456010 (+) Length   121 a.a.
NCBI ID   WP_003084587.1    Uniprot ID   A0A0H2ZKW2
Organism   Pseudomonas aeruginosa strain NY5085     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 450645..461010
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N9J97_RS02115 (N9J97_02115) pyrR 451267..451779 (-) 513 WP_023097137.1 bifunctional pyr operon transcriptional regulator/uracil phosphoribosyltransferase PyrR -
  N9J97_RS02120 (N9J97_02120) ruvX 451891..452325 (-) 435 WP_003084575.1 Holliday junction resolvase RuvX -
  N9J97_RS02125 (N9J97_02125) - 452325..452894 (-) 570 WP_003084577.1 YqgE/AlgH family protein -
  N9J97_RS02130 (N9J97_02130) - 452943..453836 (-) 894 WP_003162015.1 energy transducer TonB -
  N9J97_RS02135 (N9J97_02135) gshB 453983..454936 (-) 954 WP_003100943.1 glutathione synthase -
  N9J97_RS02140 (N9J97_02140) pilG 455191..455598 (+) 408 WP_003084583.1 twitching motility response regulator PilG Regulator
  N9J97_RS02145 (N9J97_02145) pilH 455645..456010 (+) 366 WP_003084587.1 twitching motility response regulator PilH Machinery gene
  N9J97_RS02150 (N9J97_02150) - 456061..456597 (+) 537 WP_003084590.1 chemotaxis protein CheW -
  N9J97_RS02155 (N9J97_02155) pilJ 456682..458730 (+) 2049 WP_003084592.1 chemotaxis chemoreceptor PilJ -
  N9J97_RS02160 (N9J97_02160) pilK 458791..459666 (+) 876 WP_003100938.1 type 4 fimbrial methyltransferase PilK -

Sequence

Protein


Download         Length: 121 a.a.        Molecular weight: 13273.30 Da        Isoelectric Point: 5.1961

>NTDB_id=637124 N9J97_RS02145 WP_003084587.1 455645..456010(+) (pilH) [Pseudomonas aeruginosa strain NY5085]
MARILIVDDSPTEMYKLTAMLEKHGHQVLKAENGGDGVALARQEKPDVVLMDIVMPGLNGFQATRQLTKDAETSAIPVII
VTTKDQETDKVWGKRQGARDYLTKPVDEETLLKTINAVLAG

Nucleotide


Download         Length: 366 bp        

>NTDB_id=637124 N9J97_RS02145 WP_003084587.1 455645..456010(+) (pilH) [Pseudomonas aeruginosa strain NY5085]
ATGGCTCGTATTTTGATTGTTGATGACTCTCCGACCGAGATGTACAAGCTGACCGCCATGCTGGAAAAGCATGGTCACCA
GGTACTCAAGGCCGAGAACGGCGGCGACGGCGTCGCCCTGGCCCGCCAGGAAAAGCCCGACGTGGTCCTGATGGACATCG
TCATGCCCGGCCTCAACGGCTTCCAGGCGACCCGTCAATTGACCAAGGACGCCGAGACCAGCGCCATCCCGGTGATCATC
GTCACCACCAAGGACCAGGAGACCGACAAGGTCTGGGGCAAGCGCCAGGGCGCGCGCGACTACCTGACCAAGCCGGTGGA
CGAAGAGACCCTGCTGAAAACCATCAATGCGGTGCTGGCGGGCTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-116)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2ZKW2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Synechocystis sp. PCC 6803

36.975

98.347

0.364