Detailed information    

insolico Bioinformatically predicted

Overview


Name   uvrA   Type   Machinery gene
Locus tag   LLE27_RS06235 Genome accession   NZ_CP106782
Coordinates   1191991..1194843 (+) Length   950 a.a.
NCBI ID   WP_003699235.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain 10795     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context


Location: 1186991..1199843
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LLE27_RS06220 (LLE27_06220) - 1187241..1187831 (-) 591 WP_003689643.1 aminodeoxychorismate/anthranilate synthase component II -
  LLE27_RS06225 (LLE27_06225) znuD 1188242..1190518 (+) 2277 WP_025455952.1 TonB-dependent zinc receptor ZnuD -
  LLE27_RS06230 (LLE27_06230) - 1191058..1191837 (-) 780 WP_003699236.1 phosphatidylserine decarboxylase -
  LLE27_RS06235 (LLE27_06235) uvrA 1191991..1194843 (+) 2853 WP_003699235.1 excinuclease ABC subunit UvrA Machinery gene
  LLE27_RS06240 (LLE27_06240) - 1194854..1196836 (+) 1983 WP_003692251.1 AAA family ATPase -
  LLE27_RS06245 (LLE27_06245) - 1196986..1197129 (-) 144 WP_010360533.1 hypothetical protein -
  LLE27_RS06250 (LLE27_06250) - 1197152..1197340 (+) 189 WP_014580099.1 transposase -
  LLE27_RS06255 (LLE27_06255) - 1197337..1197990 (-) 654 WP_229930273.1 IS1595 family transposase -
  LLE27_RS06260 (LLE27_06260) - 1198132..1199766 (-) 1635 WP_003689652.1 CTP synthase -

Sequence


Protein


Download         Length: 950 a.a.        Molecular weight: 105576.26 Da        Isoelectric Point: 7.1727

>NTDB_id=637090 LLE27_RS06235 WP_003699235.1 1191991..1194843(+) (uvrA) [Neisseria gonorrhoeae strain 10795]
MCNHHPRHSHDNDTIRIRGARTHNLKNIDLDIPRHKLVVVTGLSGSGKSSLAFDTLYAEGQRRYVESLSAYARQFLQMMD
KPDVDLIEGLSPAISIEQKSTSHNPRSTVGTVTEIHDYLRLLYARVGTPYCPEHKLPLSSQTVSQMVDAVLKLPEDTRVM
ILGPAVRERKGEFVDFFADLQAQGFARVRVDGEVYQLDEVPKLEKNIKHNIDVVIDRVKVKADIKQRLAESFETALRHGN
ERALAMEMDSGEEHWFSARFACPVCSYSLPELEPRLFSFNNPMGSCPTCDGLGNTNFFDPEKVVAHPELSLATGAIDGWD
KRNQFYFQMIQSLAHHYKFDVNVAWETLPEKVKKVVLHGSGKEVIDFTYLSERGTTFNRSHAFEGIIPNLERRYRETDSE
TVREKLREYQNHRACPSCGGARLRKEARYVYVGGEPLHEVSAWPLTKTHRFFETLDLDGNKKQIAEKILKEITERLGFLI
NVGLDYLNLSRSAETLSGGEAQRIRLASQIGSGLTGVMYVLDEPSIGLHQRDNDRLLATLKRLRDLGNSVIVVEHDEDAI
READFVVDMGPGAGEHGGNVLIADTPENVAKCEKSVTGQYLGGKKSIAVPSERTPVNPGRMLVLKGARGNNLKNVTLELP
LGLITCITGVSGSGKSTLINDTLAKITARELNRAQEEPAPYDDIRGLEHLDKVINVDQSPIGRTPRSNPATYTGLFTPIR
ELFAGVPLSRERGYNVGRFSFNVKGGRCEACQGDGVIKVEMHFLPDVYVPCEVCHGKRYNRETLEIQYKGKNISQVLDMT
VEEAREFFDAVPTVSRKLQTLMDVGLGYIRLGQSATTLSGGEAQRVKLALELSKRDTGRTLYILDEPTTGLHFADIALLL
EVIGRLKGKGNSIVIIEHNLDVIKTADWIVDLGPEGGDGGGKVIAKGSPEQVAKIKGSYTGKYLKVALNK

Nucleotide


Download         Length: 2853 bp        

>NTDB_id=637090 LLE27_RS06235 WP_003699235.1 1191991..1194843(+) (uvrA) [Neisseria gonorrhoeae strain 10795]
ATGTGCAACCATCATCCCCGACATTCGCACGACAACGACACCATCCGCATTCGCGGCGCGCGCACGCATAATTTGAAAAA
CATCGATTTGGACATTCCCCGCCACAAGCTCGTGGTGGTAACAGGATTGTCAGGCAGCGGCAAATCATCGCTGGCGTTTG
ATACTTTATATGCCGAAGGGCAGCGGCGTTATGTCGAGAGCCTGTCTGCCTATGCGCGGCAGTTTTTGCAGATGATGGAC
AAACCCGATGTCGATTTGATTGAAGGCCTGTCGCCTGCGATTTCCATCGAGCAGAAATCCACCAGCCACAATCCGCGTTC
CACCGTCGGCACGGTAACGGAAATCCACGACTACCTGCGCCTTTTATACGCCCGTGTCGGCACGCCGTATTGCCCCGAAC
ACAAGCTGCCGCTATCCAGCCAAACCGTATCTCAAATGGTCGATGCCGTATTAAAACTGCCGGAAGACACGCGCGTGATG
ATTCTGGGGCCGGCGGTGCGCGAGCGTAAGGGCGAGTTTGTCGATTTCTTTGCCGACTTGCAGGCGCAAGGCTTTGCCCG
TGTGCGCGTGGACGGCGAAGTCTATCAGCTTGACGAAGTACCGAAGCTGGAAAAAAACATCAAACACAATATCGACGTCG
TCATCGACCGCGTGAAAGTGAAAGCCGACATCAAACAACGACTGGCGGAAAGTTTTGAAACCGCATTACGCCACGGCAAC
GAGCGCGCGCTGGCGATGGAAATGGACAGCGGCGAAGAACATTGGTTTTCCGCGCGTTTTGCCTGCCCCGTGTGTTCGTA
CAGCCTGCCCGAATTGGAACCGCGCCTCTTTTCGTTCAACAACCCGATGGGTTCCTGCCCGACTTGCGACGGCTTGGGCA
ACACCAATTTCTTTGACCCCGAAAAAGTGGTCGCCCACCCTGAATTGTCATTGGCAACGGGCGCGATTGACGGCTGGGAC
AAGCGCAACCAGTTCTATTTCCAAATGATTCAATCGCTGGCGCATCATTATAAATTTGATGTCAACGTCGCTTGGGAAAC
TTTGCCTGAAAAAGTCAAAAAAGTCGTGTTGCACGGCTCGGGCAAAGAAGTCATTGATTTCACCTACCTGTCCGAACGCG
GCACCACCTTCAACCGCAGCCACGCCTTCGAGGGCATCATCCCCAATCTCGAACGCCGCTACCGCGAAACCGACAGCGAA
ACCGTGCGCGAAAAACTGCGCGAGTACCAAAATCACCGTGCCTGCCCGAGCTGCGGCGGCGCACGTTTGCGCAAAGAAGC
ACGCTACGTTTACGTCGGCGGCGAACCGTTGCACGAAGTCTCCGCCTGGCCGCTGACCAAAACCCACCGATTCTTCGAAA
CGCTGGATTTGGACGGCAACAAAAAACAGATCGCCGAAAAAATCCTCAAAGAAATCACCGAGCGGCTCGGCTTCTTGATT
AACGTCGGACTGGATTACCTGAATCTAAGCCGTTCCGCCGAAACCCTTTCCGGCGGCGAAGCCCAGCGCATCCGCCTTGC
CAGCCAAATCGGCAGCGGCCTGACCGGCGTGATGTACGTTTTGGACGAACCCTCCATCGGCCTGCACCAGCGCGACAACG
ACCGCCTGCTCGCCACCCTCAAACGCCTGCGCGATTTGGGCAACAGCGTAATTGTGGTCGAACACGACGAAGACGCCATC
CGCGAAGCCGATTTCGTCGTCGATATGGGCCCCGGCGCGGGCGAACACGGCGGCAACGTACTGATTGCCGACACACCCGA
AAATGTCGCCAAATGCGAAAAATCCGTTACCGGACAATACCTCGGCGGTAAAAAATCCATTGCCGTGCCGTCTGAACGCA
CGCCCGTCAATCCCGGCCGAATGCTCGTCCTCAAAGGCGCGCGCGGCAACAACCTCAAAAACGTAACCCTCGAGTTGCCG
CTTGGTTTGATTACCTGCATCACCGGCGTATCCGGCAGCGGCAAATCCACCCTGATTAACGACACCCTCGCCAAAATCAC
CGCCCGCGAACTCAACCGCGCCCAAGAAGAGCCCGCCCCATACGACGACATCCGCGGCCTCGAACACCTCGACAAAGTCA
TCAACGTCGACCAATCCCCCATCGGCCGCACCCCGCGCTCCAACCCCGCCACCTACACCGGTCTGTTCACCCCCATCCGC
GAACTCTTCGCCGGCGTACCCCTCTCGCGCGAACGCGGCTACAACGTCGGCAGATTCTCCTTCAACGTCAAAGGCGGCCG
CTGCGAAGCCTGCCAAGGCGACGGCGTAATCAAAGTCGAAATGCACTTCCTGCCCGACGTGTACGTCCCCTGCGAAGTCT
GCCACGGCAAACGCTACAACCGCGAAACCCTCGAAATCCAATACAAAGGCAAAAACATCAGCCAAGTCCTCGACATGACG
GTCGAAGAAGCCCGCGAATTTTTCGACGCCGTCCCCACCGTATCGCGCAAACTGCAAACCCTGATGGACGTAGGTCTCGG
CTACATCCGCCTCGGCCAATCCGCCACCACCCTCTCCGGCGGCGAAGCCCAGCGCGTCAAACTCGCCTTGGAACTCTCCA
AACGCGACACCGGCAGAACGCTCTACATCCTCGACGAACCCACCACCGGCCTGCACTTCGCCGACATCGCCCTGCTGCTG
GAAGTCATAGGCCGTCTGAAAGGCAAAGGCAACTCGATTGTGATTATCGAGCATAATCTGGATGTAATTAAAACCGCGGA
TTGGATTGTGGACTTAGGGCCGGAAGGCGGCGATGGTGGGGGTAAGGTTATCGCGAAAGGTAGCCCTGAACAAGTGGCTA
AAATTAAGGGGAGTTATACCGGGAAGTATTTGAAAGTAGCGTTGAATAAGTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrA Streptococcus pneumoniae R6

59.086

99.053

0.585

  uvrA Streptococcus pneumoniae TIGR4

59.086

99.053

0.585

  uvrA Streptococcus pneumoniae D39

59.086

99.053

0.585