Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGD   Type   Machinery gene
Locus tag   LUZ07_RS02460 Genome accession   NZ_CP089476
Coordinates   460201..460647 (+) Length   148 a.a.
NCBI ID   WP_001790850.1    Uniprot ID   -
Organism   Staphylococcus aureus strain 3596_II_ST8     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 455201..465647
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LUZ07_RS02425 - 455695..455898 (+) 204 WP_000087561.1 YqgQ family protein -
  LUZ07_RS02430 - 455895..456881 (+) 987 WP_000161314.1 ROK family glucokinase -
  LUZ07_RS02435 - 456881..457210 (+) 330 WP_001018871.1 MTH1187 family thiamine-binding protein -
  LUZ07_RS02440 - 457207..457830 (+) 624 WP_001223008.1 MBL fold metallo-hydrolase -
  LUZ07_RS02445 comGA 457882..458856 (+) 975 WP_000697228.1 competence type IV pilus ATPase ComGA Machinery gene
  LUZ07_RS02450 comGB 458828..459898 (+) 1071 WP_000775708.1 competence type IV pilus assembly protein ComGB Machinery gene
  LUZ07_RS02455 comGC 459912..460223 (+) 312 WP_000472256.1 competence type IV pilus major pilin ComGC Machinery gene
  LUZ07_RS02460 comGD 460201..460647 (+) 447 WP_001790850.1 competence type IV pilus minor pilin ComGD Machinery gene
  LUZ07_RS02465 comGE 460634..460933 (+) 300 WP_000844413.1 hypothetical protein Machinery gene
  LUZ07_RS02470 comGF 460851..461348 (+) 498 WP_001803317.1 competence type IV pilus minor pilin ComGF Machinery gene
  LUZ07_RS02475 - 461445..461591 (+) 147 WP_001789879.1 hypothetical protein -
  LUZ07_RS02480 - 461581..462105 (+) 525 WP_001015117.1 shikimate kinase -
  LUZ07_RS02485 gcvT 462264..463355 (+) 1092 WP_000093351.1 glycine cleavage system aminomethyltransferase GcvT -
  LUZ07_RS02490 gcvPA 463375..464721 (+) 1347 WP_000019687.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPA -

Sequence

Protein


Download         Length: 148 a.a.        Molecular weight: 17213.42 Da        Isoelectric Point: 10.3682

>NTDB_id=637075 LUZ07_RS02460 WP_001790850.1 460201..460647(+) (comGD) [Staphylococcus aureus strain 3596_II_ST8]
MEKQLQIRKQSAFTMIEMLVVMMLISIFLLLTMTSKGLSNLRVIDDEANIISFITELNYIKSQAIANQGYINVRFYENSD
TIKVIENNKIRFLKLKVGKIINVAKVDIIAFDKKGNINKFGSITIYNNNSIYRIIFHIEKGRIRYEKL

Nucleotide


Download         Length: 447 bp        

>NTDB_id=637075 LUZ07_RS02460 WP_001790850.1 460201..460647(+) (comGD) [Staphylococcus aureus strain 3596_II_ST8]
ATGGAGAAGCAGTTGCAAATTAGAAAGCAGTCAGCATTTACTATGATTGAGATGCTTGTGGTAATGATGTTAATCAGTAT
ATTTCTACTTTTGACAATGACATCTAAAGGATTAAGCAATCTTAGAGTAATAGATGATGAGGCAAATATCATTTCTTTTA
TTACTGAATTGAATTATATTAAGTCGCAAGCTATAGCAAATCAAGGATATATCAATGTTAGATTTTATGAAAACAGTGAC
ACTATTAAAGTAATAGAGAATAATAAAATACGATTTCTAAAATTAAAAGTAGGCAAAATAATTAATGTTGCAAAAGTTGA
TATTATTGCCTTTGATAAAAAAGGGAATATCAATAAATTTGGTAGCATAACAATTTACAATAACAATTCAATTTATAGAA
TAATATTCCATATTGAAAAAGGAAGAATTCGTTATGAAAAGCTATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(8-31)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGD Staphylococcus aureus MW2

99.324

100

0.993
  comGD Staphylococcus aureus N315

99.324

100

0.993