Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   LUY92_RS13775 Genome accession   NZ_CP089473
Coordinates   2765866..2766261 (+) Length   131 a.a.
NCBI ID   WP_000932694.1    Uniprot ID   -
Organism   Staphylococcus aureus strain 0.1239_III_ST239     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2760866..2771261
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LUY92_RS13745 - 2762124..2762528 (+) 405 WP_001094394.1 F0F1 ATP synthase subunit epsilon -
  LUY92_RS13750 - 2762866..2762958 (+) 93 WP_001790611.1 hypothetical protein -
  LUY92_RS13755 - 2763090..2763323 (+) 234 WP_000384523.1 DUF1146 family protein -
  LUY92_RS13760 murA 2763434..2764699 (+) 1266 WP_000358006.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  LUY92_RS13765 fabZ 2764733..2765173 (+) 441 WP_000447678.1 3-hydroxyacyl-ACP dehydratase FabZ -
  LUY92_RS13770 - 2765232..2765672 (-) 441 WP_000846746.1 YwpF-like family protein -
  LUY92_RS13775 ssb 2765866..2766261 (+) 396 WP_000932694.1 single-stranded DNA-binding protein Machinery gene
  LUY92_RS13780 sceD 2766650..2767345 (+) 696 WP_000752005.1 lytic transglycosylase SceD -
  LUY92_RS13785 tenA 2767732..2768421 (+) 690 WP_407546661.1 thiaminase II -
  LUY92_RS13790 thiD 2768414..2769244 (+) 831 WP_000594954.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  LUY92_RS13795 thiM 2769228..2770019 (+) 792 WP_001108483.1 hydroxyethylthiazole kinase -
  LUY92_RS13800 thiE 2770021..2770662 (+) 642 WP_000483153.1 thiamine phosphate synthase -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 15042.09 Da        Isoelectric Point: 5.6824

>NTDB_id=637057 LUY92_RS13775 WP_000932694.1 2765866..2766261(+) (ssb) [Staphylococcus aureus strain 0.1239_III_ST239]
MLNKIVIVGRLTKDAQIFEKEDRKIATFCVATHRNYKDENGEIVCDYLFCKAFGKLASNIEKYTNQGTLVGITGQMRSRK
YDKDGQTHFVTELYVETIKFMSPKSQNNEILSDSILDIDSQNIDNHDLLEI

Nucleotide


Download         Length: 396 bp        

>NTDB_id=637057 LUY92_RS13775 WP_000932694.1 2765866..2766261(+) (ssb) [Staphylococcus aureus strain 0.1239_III_ST239]
ATGCTAAATAAAATCGTAATTGTCGGGAGACTGACGAAAGACGCACAAATATTTGAAAAGGAGGATAGAAAAATTGCAAC
GTTTTGTGTTGCAACGCACCGAAATTATAAAGATGAAAATGGAGAAATCGTCTGTGATTACTTATTCTGTAAAGCATTTG
GCAAGTTAGCTTCTAATATAGAAAAATATACTAATCAAGGTACATTGGTTGGTATAACTGGTCAAATGAGATCAAGAAAG
TATGATAAAGACGGACAAACACACTTTGTCACTGAATTATATGTTGAAACAATAAAATTTATGTCCCCTAAATCCCAAAA
TAATGAAATTCTCTCAGATAGTATTTTAGATATTGACTCTCAAAATATAGATAATCATGACTTATTAGAAATTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Staphylococcus aureus N315

100

100

1
  ssb Staphylococcus aureus MW2

99.237

100

0.992