Detailed information    

insolico Bioinformatically predicted

Overview

Name   coiA   Type   Machinery gene
Locus tag   LUY92_RS05565 Genome accession   NZ_CP089473
Coordinates   1099512..1100498 (-) Length   328 a.a.
NCBI ID   WP_000959282.1    Uniprot ID   A0A7U7EXT8
Organism   Staphylococcus aureus strain 0.1239_III_ST239     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 1094512..1105498
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LUY92_RS05540 - 1094772..1095119 (-) 348 WP_001242103.1 hypothetical protein -
  LUY92_RS05545 - 1095305..1095898 (+) 594 WP_000224619.1 CYTH domain-containing protein -
  LUY92_RS05550 - 1096002..1096367 (+) 366 WP_000214070.1 truncated hemoglobin YjbI -
  LUY92_RS05555 yjbH 1096390..1097196 (+) 807 WP_000896697.1 protease adaptor protein YjbH -
  LUY92_RS05560 pepF 1097656..1099464 (-) 1809 WP_000082725.1 oligoendopeptidase F -
  LUY92_RS05565 coiA 1099512..1100498 (-) 987 WP_000959282.1 competence protein CoiA Machinery gene
  LUY92_RS05570 mecA 1100619..1101338 (-) 720 WP_001217728.1 adaptor protein MecA -
  LUY92_RS05575 spxA 1101709..1102104 (-) 396 WP_000258003.1 transcriptional regulator SpxA -
  LUY92_RS05580 trpS 1102398..1103387 (+) 990 WP_000448934.1 tryptophan--tRNA ligase -
  LUY92_RS05585 opp4C 1103429..1104310 (-) 882 WP_001180280.1 oligopeptide ABC transporter permease -
  LUY92_RS05590 opp4B 1104322..1105284 (-) 963 WP_000915997.1 oligopeptide ABC transporter permease -

Sequence

Protein


Download         Length: 328 a.a.        Molecular weight: 38878.55 Da        Isoelectric Point: 9.5714

>NTDB_id=637039 LUY92_RS05565 WP_000959282.1 1099512..1100498(-) (coiA) [Staphylococcus aureus strain 0.1239_III_ST239]
MLVALNEEKERVLATTALRKTQYFCPVCGKQVILKRGLKVISHFAHKHLAEQKCFNNETIKHYKSKLILAQMIQQQGCKV
EIEPFLKEIKQIPDILINNKYVIELQYSPIPYKQILQRTEGLKKMGYKVSWLLNDVDYCHNKVKFNHFHSLFINPITRKL
HTFNLEKKQIMMFQQIQYLGGHKYVAEKRNAKIIELFNEAPCDYHAVYKLSKFAINQYIKYCRWQNSVLEPTLSAMYQLQ
LTDQEVVYNYGYIFPEQIYIENHPIEWQLQVDLWLKNGKSKLVNDNLNYFKLKKFIVALESKTAIIEKLINNYLNICSDR
GNDVQILF

Nucleotide


Download         Length: 987 bp        

>NTDB_id=637039 LUY92_RS05565 WP_000959282.1 1099512..1100498(-) (coiA) [Staphylococcus aureus strain 0.1239_III_ST239]
ATGTTAGTAGCTTTAAATGAAGAAAAGGAACGTGTGTTAGCAACTACTGCATTGAGAAAGACACAATATTTTTGTCCTGT
GTGTGGCAAGCAAGTTATTTTAAAGCGTGGGCTCAAAGTAATTAGTCATTTTGCACATAAACATTTAGCGGAACAAAAAT
GTTTTAATAATGAAACGATTAAACATTATAAAAGTAAATTGATTTTAGCACAGATGATACAGCAACAAGGATGTAAAGTA
GAGATAGAGCCATTTTTAAAAGAAATAAAACAAATTCCGGATATTTTGATTAATAATAAATATGTTATTGAGCTACAGTA
TTCGCCAATTCCTTATAAACAGATTCTTCAACGAACGGAAGGTTTAAAGAAAATGGGATATAAAGTAAGTTGGTTATTAA
ATGATGTTGATTATTGTCATAATAAAGTGAAGTTCAATCATTTTCATAGTTTGTTTATTAATCCAATCACTCGAAAACTT
CATACGTTCAATTTAGAGAAAAAACAAATAATGATGTTTCAACAAATACAATATTTAGGCGGGCACAAATATGTCGCTGA
AAAAAGGAATGCCAAAATTATTGAGTTGTTTAATGAGGCGCCTTGTGATTATCATGCTGTTTATAAATTATCAAAGTTCG
CAATTAATCAATATATCAAATATTGTCGCTGGCAAAATTCTGTTTTAGAACCCACTTTAAGTGCAATGTATCAATTACAG
TTAACTGATCAAGAAGTAGTGTACAATTATGGTTATATTTTTCCAGAGCAAATTTATATTGAAAATCATCCAATTGAGTG
GCAATTACAAGTTGATTTATGGTTAAAGAATGGAAAAAGCAAATTAGTAAATGACAATCTTAATTATTTTAAACTGAAAA
AATTTATTGTTGCTCTAGAAAGTAAAACAGCAATTATAGAAAAACTTATTAACAATTATTTAAATATTTGTTCAGATAGA
GGTAATGACGTGCAAATTTTGTTCTAA

Domains

Predicted by InterproScan.

Competence protein CoiA-like family (CoiA_nuc)

(6-308)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7U7EXT8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  coiA Staphylococcus aureus N315

100

100

1
  coiA Staphylococcus aureus MW2

97.561

100

0.976