Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGD   Type   Machinery gene
Locus tag   LUY92_RS02420 Genome accession   NZ_CP089473
Coordinates   448414..448860 (+) Length   148 a.a.
NCBI ID   WP_001788899.1    Uniprot ID   -
Organism   Staphylococcus aureus strain 0.1239_III_ST239     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 443414..453860
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LUY92_RS02385 - 443908..444111 (+) 204 WP_000087561.1 YqgQ family protein -
  LUY92_RS02390 - 444108..445094 (+) 987 WP_000161311.1 ROK family glucokinase -
  LUY92_RS02395 - 445094..445423 (+) 330 WP_001018871.1 MTH1187 family thiamine-binding protein -
  LUY92_RS02400 - 445420..446043 (+) 624 WP_001223008.1 MBL fold metallo-hydrolase -
  LUY92_RS02405 comGA 446095..447069 (+) 975 WP_000697220.1 competence type IV pilus ATPase ComGA Machinery gene
  LUY92_RS02410 comGB 447041..448111 (+) 1071 WP_000776422.1 competence type IV pilus assembly protein ComGB Machinery gene
  LUY92_RS02415 comGC 448125..448436 (+) 312 WP_000472256.1 competence type IV pilus major pilin ComGC Machinery gene
  LUY92_RS02420 comGD 448414..448860 (+) 447 WP_001788899.1 competence type IV pilus minor pilin ComGD Machinery gene
  LUY92_RS02425 comGE 448847..449146 (+) 300 WP_000844410.1 hypothetical protein Machinery gene
  LUY92_RS02430 comGF 449064..449561 (+) 498 WP_001788897.1 competence type IV pilus minor pilin ComGF Machinery gene
  LUY92_RS02435 - 449658..449804 (+) 147 WP_001792109.1 hypothetical protein -
  LUY92_RS02440 - 449794..450318 (+) 525 WP_001015120.1 shikimate kinase -
  LUY92_RS02445 gcvT 450477..451568 (+) 1092 WP_000093349.1 glycine cleavage system aminomethyltransferase GcvT -
  LUY92_RS02450 gcvPA 451588..452934 (+) 1347 WP_000019691.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPA -

Sequence

Protein


Download         Length: 148 a.a.        Molecular weight: 17165.33 Da        Isoelectric Point: 10.3312

>NTDB_id=637031 LUY92_RS02420 WP_001788899.1 448414..448860(+) (comGD) [Staphylococcus aureus strain 0.1239_III_ST239]
MEKQLQIRKQSAFTMIEMLVVMMLISIFLLLTMTSKGLSNLRVIDDEANIISFITELNYIKSQAIANQGYINVRFYENSD
TIKVIENNKIRFLKLKVGKIINVAKVDIIAFDKKGNINKFGSITIDNNNSIYRIIFHIEKGRIRYEKL

Nucleotide


Download         Length: 447 bp        

>NTDB_id=637031 LUY92_RS02420 WP_001788899.1 448414..448860(+) (comGD) [Staphylococcus aureus strain 0.1239_III_ST239]
ATGGAGAAGCAGTTGCAAATTAGAAAGCAGTCAGCATTTACTATGATTGAGATGCTTGTGGTAATGATGTTAATCAGTAT
ATTTCTACTTTTGACAATGACATCTAAAGGATTAAGCAATCTTAGAGTAATAGATGATGAGGCAAATATCATTTCTTTTA
TTACTGAATTGAATTATATTAAGTCGCAAGCTATAGCAAATCAAGGATATATCAATGTTAGATTTTATGAAAACAGTGAC
ACTATTAAAGTAATAGAGAATAATAAAATACGATTTCTAAAATTAAAAGTAGGCAAAATAATTAATGTTGCAAAAGTTGA
TATTATTGCCTTTGATAAAAAAGGGAATATCAATAAATTTGGTAGCATAACAATTGACAATAACAATTCAATTTATAGAA
TAATATTCCATATTGAAAAAGGAAGAATTCGTTATGAAAAGCTATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(8-31)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGD Staphylococcus aureus MW2

100

100

1
  comGD Staphylococcus aureus N315

100

100

1