Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   U063_RS07480 Genome accession   NC_022886
Coordinates   1521215..1521790 (-) Length   191 a.a.
NCBI ID   WP_038420248.1    Uniprot ID   -
Organism   Helicobacter pylori BM012A     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1516215..1526790
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U063_RS07470 (U063_1493) - 1518532..1519146 (-) 615 WP_023592615.1 restriction endonuclease subunit S -
  U063_RS07475 (U063_1494) - 1519143..1521182 (-) 2040 WP_023592616.1 class I SAM-dependent DNA methyltransferase -
  U063_RS07480 (U063_1495) comFC 1521215..1521790 (-) 576 WP_038420248.1 ComF family protein Machinery gene
  U063_RS07485 (U063_1496) tmk 1521778..1522353 (-) 576 WP_023592618.1 dTMP kinase -
  U063_RS07490 (U063_1497) coaD 1522355..1522828 (-) 474 WP_023592619.1 pantetheine-phosphate adenylyltransferase -
  U063_RS07495 (U063_1498) - 1522828..1523391 (-) 564 WP_023592620.1 UbiX family flavin prenyltransferase -
  U063_RS07500 (U063_1499) flgA 1523401..1524057 (-) 657 WP_023592621.1 flagellar basal body P-ring formation chaperone FlgA -
  U063_RS07505 (U063_1500) uvrD 1524054..1526099 (-) 2046 WP_038420449.1 DNA helicase UvrD -

Sequence

Protein


Download         Length: 191 a.a.        Molecular weight: 21351.90 Da        Isoelectric Point: 8.8864

>NTDB_id=63703 U063_RS07480 WP_038420248.1 1521215..1521790(-) (comFC) [Helicobacter pylori BM012A]
MRCLTCLKLSFKPLCPNCLNDLPLSLKVRVLEGVSVYSFYAYSEVEELIKSKYALIGSRILPLLSQKAGKEFVKILQEQG
LNIPLYGIAIDDKIKSFYSHSAALLKGFCQGNLKATYGRLRANNAVSYAGKSLEFRANNPRDFTFKGDESLDYFLLDDII
TTGTTLKEALKYLKTLNIKAHFAIALCSTDE

Nucleotide


Download         Length: 576 bp        

>NTDB_id=63703 U063_RS07480 WP_038420248.1 1521215..1521790(-) (comFC) [Helicobacter pylori BM012A]
ATGCGTTGTTTAACCTGTTTGAAGCTTTCTTTTAAGCCTCTTTGTCCAAATTGCTTGAACGATTTGCCCTTAAGCTTAAA
GGTAAGGGTTTTAGAGGGCGTGAGCGTGTATAGTTTTTACGCTTATAGCGAAGTAGAAGAACTCATTAAAAGCAAATACG
CGCTGATTGGCTCTCGCATTTTGCCCTTGCTTTCTCAAAAAGCCGGCAAAGAATTTGTGAAAATCTTACAAGAACAAGGC
TTGAACATTCCCCTTTATGGCATCGCCATTGATGATAAAATCAAATCCTTTTACTCGCATTCAGCCGCGCTTTTAAAAGG
CTTTTGCCAAGGCAATCTAAAAGCCACTTACGGGCGTTTAAGGGCTAATAATGCTGTTTCGTATGCCGGGAAAAGCCTGG
AATTTCGTGCCAATAACCCACGGGATTTCACCTTCAAAGGCGATGAAAGTTTAGATTATTTTTTATTAGATGATATTATC
ACCACCGGCACCACCCTAAAAGAAGCCCTAAAATACCTTAAAACCCTAAACATCAAAGCCCACTTTGCGATTGCGCTTTG
CAGCACGGATGAATGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Helicobacter pylori 26695

96.859

100

0.969

Multiple sequence alignment