Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   LT922_RS08695 Genome accession   NZ_CP089445
Coordinates   1802980..1803609 (+) Length   209 a.a.
NCBI ID   WP_000839151.1    Uniprot ID   A0A066SWI0
Organism   Escherichia coli strain 5-1     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1797980..1808609
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LT922_RS08675 (LT922_08675) ycbZ 1798370..1800130 (-) 1761 WP_000156502.1 AAA family ATPase -
  LT922_RS08680 (LT922_08680) matP 1800316..1800768 (+) 453 WP_000877153.1 macrodomain Ter protein MatP -
  LT922_RS08685 (LT922_08685) ompA 1800844..1801896 (-) 1053 WP_001346420.1 porin OmpA -
  LT922_RS08690 (LT922_08690) sulA 1802252..1802761 (-) 510 WP_000288707.1 SOS-induced cell division inhibitor SulA -
  LT922_RS08695 (LT922_08695) sxy/tfoX 1802980..1803609 (+) 630 WP_000839151.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  LT922_RS08700 (LT922_08700) yccS 1803572..1805734 (-) 2163 WP_000875041.1 YccS family putative transporter -
  LT922_RS08705 (LT922_08705) yccF 1805744..1806190 (-) 447 WP_001261235.1 YccF domain-containing protein -
  LT922_RS08710 (LT922_08710) helD 1806313..1808367 (+) 2055 WP_001295938.1 DNA helicase IV -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24163.08 Da        Isoelectric Point: 9.0428

>NTDB_id=636973 LT922_RS08695 WP_000839151.1 1802980..1803609(+) (sxy/tfoX) [Escherichia coli strain 5-1]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
CLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=636973 LT922_RS08695 WP_000839151.1 1802980..1803609(+) (sxy/tfoX) [Escherichia coli strain 5-1]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGTAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGAGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
TGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGGGCCATTATCGGCATTCATGAAGCTGCGCTCCCAGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(116-194)

TfoX N-terminal domain (TfoX_N)

(14-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A066SWI0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

99.522

100

0.995