Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   LT980_RS15815 Genome accession   NZ_CP089437
Coordinates   3228211..3228825 (-) Length   204 a.a.
NCBI ID   WP_250671118.1    Uniprot ID   -
Organism   Citrobacter portucalensis strain GD21SC92T     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3223211..3233825
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LT980_RS15800 (LT980_15790) helD 3223435..3225489 (-) 2055 WP_198801980.1 DNA helicase IV -
  LT980_RS15805 (LT980_15795) - 3225615..3226061 (+) 447 WP_003831998.1 YccF domain-containing protein -
  LT980_RS15810 (LT980_15800) yccS 3226080..3228233 (+) 2154 WP_048236463.1 YccS family putative transporter -
  LT980_RS15815 (LT980_15805) sxy/tfoX 3228211..3228825 (-) 615 WP_250671118.1 TfoX/Sxy family DNA transformation protein Regulator
  LT980_RS15820 (LT980_15810) sulA 3229043..3229552 (+) 510 WP_195995542.1 SOS-induced cell division inhibitor SulA -
  LT980_RS15825 (LT980_15815) ompA 3229910..3230968 (+) 1059 WP_048235693.1 porin OmpA -
  LT980_RS15830 (LT980_15820) matP 3231058..3231510 (-) 453 WP_032942905.1 macrodomain Ter protein MatP -
  LT980_RS15835 (LT980_15825) - 3231696..3233456 (+) 1761 WP_128316950.1 Lon protease family protein -

Sequence

Protein


Download         Length: 204 a.a.        Molecular weight: 23154.52 Da        Isoelectric Point: 8.6049

>NTDB_id=636936 LT980_RS15815 WP_250671118.1 3228211..3228825(-) (sxy/tfoX) [Citrobacter portucalensis strain GD21SC92T]
MKELSYARIYKSQEYLASLGTIHYRSLFGGYSLTVGDTVFAMVANGELYLRACEQSAQYCVQNSPVWLTFIKRGRPLVLN
YYQVNDALWQNQQQLVSLSRYSLDAAVKEKQSRFAQHRLRELPNMTFHLETLLNEAGIKDEGTMRSLGAQMCWLKLRQNN
PALTVKVLYALEGAVGGVHEAALPATRRQELVEWVSSLTPEPGY

Nucleotide


Download         Length: 615 bp        

>NTDB_id=636936 LT980_RS15815 WP_250671118.1 3228211..3228825(-) (sxy/tfoX) [Citrobacter portucalensis strain GD21SC92T]
ATGAAAGAGCTTTCTTATGCAAGGATCTATAAATCGCAGGAATATCTGGCTTCTCTGGGGACAATTCACTATCGCTCACT
GTTTGGTGGCTACAGTCTGACGGTTGGCGATACGGTCTTTGCCATGGTCGCTAATGGTGAGCTGTATCTTCGCGCCTGTG
AGCAGAGCGCCCAGTATTGTGTACAAAATTCTCCTGTCTGGCTGACATTTATTAAGCGCGGACGTCCTCTTGTACTTAAT
TATTACCAGGTGAACGATGCCCTGTGGCAAAACCAGCAGCAGCTGGTGTCGCTATCGCGATATTCGTTGGATGCAGCGGT
TAAGGAAAAACAGAGTCGCTTTGCCCAGCATCGTCTGCGGGAATTGCCGAATATGACGTTTCATCTGGAGACTCTGTTGA
ATGAAGCTGGAATTAAAGATGAGGGGACCATGCGATCGTTGGGAGCACAAATGTGCTGGCTGAAACTTCGGCAAAATAAC
CCGGCTCTGACGGTAAAAGTACTCTATGCCCTTGAAGGCGCGGTAGGGGGGGTACATGAAGCCGCGCTCCCGGCGACGCG
TCGCCAGGAGCTGGTTGAGTGGGTAAGTTCTCTTACGCCGGAGCCGGGGTATTAG

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(116-194)

TfoX N-terminal domain (TfoX_N)

(14-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

67.157

100

0.672