Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   LUW93_RS09425 Genome accession   NZ_CP089411
Coordinates   2052988..2053611 (+) Length   207 a.a.
NCBI ID   WP_004100775.1    Uniprot ID   A0AAD3YQU3
Organism   Klebsiella oxytoca strain Kox100     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 2047988..2058611
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LUW93_RS09405 (LUW93_09405) - 2048088..2049845 (-) 1758 WP_004111904.1 AAA family ATPase -
  LUW93_RS09410 (LUW93_09410) matP 2050030..2050482 (+) 453 WP_004100768.1 macrodomain Ter protein MatP -
  LUW93_RS09415 (LUW93_09415) ompA 2050593..2051663 (-) 1071 WP_202860524.1 porin OmpA -
  LUW93_RS09420 (LUW93_09420) sulA 2052017..2052526 (-) 510 WP_026055887.1 SOS-induced cell division inhibitor SulA -
  LUW93_RS09425 (LUW93_09425) sxy/tfoX 2052988..2053611 (+) 624 WP_004100775.1 TfoX/Sxy family DNA transformation protein Regulator
  LUW93_RS09430 (LUW93_09430) yccS 2053599..2055734 (-) 2136 WP_049591090.1 YccS family putative transporter -
  LUW93_RS09435 (LUW93_09435) - 2055752..2056198 (-) 447 WP_004100782.1 YccF domain-containing protein -
  LUW93_RS09440 (LUW93_09440) helD 2056321..2058375 (+) 2055 WP_016808043.1 DNA helicase IV -

Sequence

Protein


Download         Length: 207 a.a.        Molecular weight: 23688.71 Da        Isoelectric Point: 10.2095

>NTDB_id=636835 LUW93_RS09425 WP_004100775.1 2052988..2053611(+) (sxy/tfoX) [Klebsiella oxytoca strain Kox100]
MKKLVCLRIHQFRACLSPLGKISCRPLFGGYSLAIDNTVFAMMAEGEIYLRVCEQSAQYRVAHKNPLLKMQKNGRLVALK
YYHIDEGLWRDSKMLFHLSALSLQTARNEKHRQRHSGRLKNLPNISFHMELQLINSGIKDELTLRKIGAKEAWLRLRKMN
KALTVNVLYSLEGAIAGVHAATLPTQQRQELEEWAAVQVQEMEAYSG

Nucleotide


Download         Length: 624 bp        

>NTDB_id=636835 LUW93_RS09425 WP_004100775.1 2052988..2053611(+) (sxy/tfoX) [Klebsiella oxytoca strain Kox100]
ATGAAGAAACTCGTATGTCTTAGGATCCATCAGTTTCGGGCATGTTTGTCTCCATTAGGAAAAATAAGCTGTCGGCCCTT
ATTTGGTGGCTATAGCCTGGCGATAGATAATACCGTGTTTGCCATGATGGCTGAGGGGGAGATCTATCTTCGGGTTTGTG
AGCAGAGTGCGCAGTATCGCGTGGCGCATAAAAACCCGCTGTTGAAGATGCAGAAGAATGGTCGTCTGGTTGCGCTTAAG
TACTATCATATAGATGAAGGGCTTTGGCGTGACAGCAAAATGCTTTTTCATTTATCAGCGCTATCATTACAGACCGCTCG
TAATGAAAAACATCGGCAGCGACATTCCGGAAGATTAAAGAATCTTCCAAATATTAGTTTTCACATGGAGCTCCAGTTGA
TTAATTCAGGTATCAAAGATGAATTAACGCTGCGAAAAATTGGCGCGAAAGAAGCCTGGCTCAGACTACGAAAAATGAAT
AAAGCGCTAACGGTAAACGTCCTTTATTCATTAGAGGGAGCTATTGCGGGCGTGCATGCGGCCACGCTCCCGACGCAACA
GCGTCAGGAGCTTGAGGAGTGGGCGGCGGTACAGGTACAGGAGATGGAGGCCTACTCAGGTTGA

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(117-194)

TfoX N-terminal domain (TfoX_N)

(15-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

52.308

94.203

0.493