Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilE   Type   Machinery gene
Locus tag   LLE35_RS11065 Genome accession   NZ_CP106773
Coordinates   2088024..2088167 (-) Length   47 a.a.
NCBI ID   WP_012503975.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain 10562     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2083024..2093167
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LLE35_RS11050 (LLE35_10970) pilA 2084265..2085518 (+) 1254 WP_003687004.1 signal recognition particle-docking protein FtsY Machinery gene
  LLE35_RS11055 (LLE35_10975) - 2085964..2086669 (-) 706 Protein_2135 opacity family porin -
  LLE35_RS12050 pilE 2087147..2087359 (-) 213 WP_405083700.1 pilin Machinery gene
  LLE35_RS12055 pilE 2087356..2087652 (-) 297 WP_405083701.1 pilin Machinery gene
  LLE35_RS11065 (LLE35_10985) pilE 2088024..2088167 (-) 144 WP_012503975.1 hypothetical protein Machinery gene
  LLE35_RS11070 (LLE35_10990) - 2088272..2088352 (-) 81 Protein_2139 pilin -
  LLE35_RS11075 (LLE35_10995) - 2088470..2088874 (-) 405 Protein_2140 pilin -
  LLE35_RS11080 (LLE35_11000) - 2089401..2089814 (-) 414 Protein_2141 pilin -
  LLE35_RS11085 (LLE35_11005) lpxC 2089914..2090837 (-) 924 WP_003687007.1 UDP-3-O-acyl-N-acetylglucosamine deacetylase -
  LLE35_RS11920 - 2091329..2092051 (-) 723 WP_374110874.1 pilin -
  LLE35_RS11105 (LLE35_11025) - 2092077..2092292 (-) 216 Protein_2144 pilin -
  LLE35_RS11110 (LLE35_11030) - 2092665..2092796 (-) 132 WP_010356054.1 hypothetical protein -

Sequence

Protein


Download         Length: 47 a.a.        Molecular weight: 5048.57 Da        Isoelectric Point: 7.2429

>NTDB_id=636817 LLE35_RS11065 WP_012503975.1 2088024..2088167(-) (pilE) [Neisseria gonorrhoeae strain 10562]
MTGFNDAAGNEKIDTKHLPSTCRDKSSAVCTKHHAPISNAFQENGAF

Nucleotide


Download         Length: 144 bp        

>NTDB_id=636817 LLE35_RS11065 WP_012503975.1 2088024..2088167(-) (pilE) [Neisseria gonorrhoeae strain 10562]
ATGACGGGATTTAATGATGCCGCCGGCAACGAAAAAATCGACACCAAGCACCTGCCGTCAACCTGCCGCGATAAATCATC
TGCCGTTTGCACGAAACACCACGCGCCGATTTCAAATGCTTTCCAAGAAAACGGAGCTTTTTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilE Neisseria gonorrhoeae strain FA1090

70

63.83

0.447