Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilE   Type   Machinery gene
Locus tag   LLE28_RS11060 Genome accession   NZ_CP106771
Coordinates   2104305..2104448 (-) Length   47 a.a.
NCBI ID   WP_012503975.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain 10531     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2099305..2109448
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LLE28_RS11045 pilA 2100912..2102165 (+) 1254 WP_003687004.1 signal recognition particle-docking protein FtsY Machinery gene
  LLE28_RS11050 - 2102436..2103149 (-) 714 WP_229930597.1 opacity family porin -
  LLE28_RS11055 - 2103711..2103941 (-) 231 Protein_2133 pilin -
  LLE28_RS11060 pilE 2104305..2104448 (-) 144 WP_012503975.1 hypothetical protein Machinery gene
  LLE28_RS11070 pilE 2104751..2105164 (-) 414 WP_229930599.1 pilin Machinery gene
  LLE28_RS11075 lpxC 2105270..2106193 (-) 924 WP_003687007.1 UDP-3-O-acyl-N-acetylglucosamine deacetylase -
  LLE28_RS11890 - 2106685..2107413 (-) 729 WP_396888834.1 pilin -
  LLE28_RS11095 - 2107439..2107654 (-) 216 Protein_2138 pilin -
  LLE28_RS11100 - 2108027..2108158 (-) 132 WP_010356054.1 hypothetical protein -
  LLE28_RS11105 - 2108240..2108928 (-) 689 Protein_2140 SprT family zinc-dependent metalloprotease -

Sequence

Protein


Download         Length: 47 a.a.        Molecular weight: 5048.57 Da        Isoelectric Point: 7.2429

>NTDB_id=636744 LLE28_RS11060 WP_012503975.1 2104305..2104448(-) (pilE) [Neisseria gonorrhoeae strain 10531]
MTGFNDAAGNEKIDTKHLPSTCRDKSSAVCTKHHAPISNAFQENGAF

Nucleotide


Download         Length: 144 bp        

>NTDB_id=636744 LLE28_RS11060 WP_012503975.1 2104305..2104448(-) (pilE) [Neisseria gonorrhoeae strain 10531]
ATGACGGGATTTAATGATGCCGCCGGCAACGAAAAAATCGACACCAAGCACCTGCCGTCAACCTGCCGCGATAAATCATC
TGCCGTTTGCACGAAACACCACGCGCCGATTTCAAATGCTTTCCAAGAAAACGGAGCTTTTTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilE Neisseria gonorrhoeae strain FA1090

70

63.83

0.447