Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilE   Type   Machinery gene
Locus tag   LLE34_RS11110 Genome accession   NZ_CP106769
Coordinates   2097139..2097282 (-) Length   47 a.a.
NCBI ID   WP_012503975.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain 10524     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2092139..2102282
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LLE34_RS11085 (LLE34_11085) pilA 2093502..2094755 (+) 1254 WP_003687004.1 signal recognition particle-docking protein FtsY Machinery gene
  LLE34_RS11090 (LLE34_11090) - 2094888..2095046 (+) 159 WP_154236104.1 hypothetical protein -
  LLE34_RS11095 (LLE34_11095) - 2095020..2095845 (-) 826 Protein_2135 opacity family porin -
  LLE34_RS11105 (LLE34_11105) - 2096254..2096771 (-) 518 Protein_2136 pilin -
  LLE34_RS11110 (LLE34_11110) pilE 2097139..2097282 (-) 144 WP_012503975.1 hypothetical protein Machinery gene
  LLE34_RS11120 (LLE34_11120) pilE 2097585..2097998 (-) 414 WP_229930599.1 pilin Machinery gene
  LLE34_RS11125 (LLE34_11125) lpxC 2098104..2099027 (-) 924 WP_003687007.1 UDP-3-O-acyl-N-acetylglucosamine deacetylase -
  LLE34_RS11930 - 2099519..2100250 (-) 732 WP_373566728.1 pilin -
  LLE34_RS11145 (LLE34_11145) - 2100276..2100491 (-) 216 Protein_2141 pilin -
  LLE34_RS11150 (LLE34_11150) - 2100864..2100995 (-) 132 WP_010356054.1 hypothetical protein -
  LLE34_RS11155 (LLE34_11155) - 2101077..2101765 (-) 689 Protein_2143 SprT family zinc-dependent metalloprotease -

Sequence

Protein


Download         Length: 47 a.a.        Molecular weight: 5048.57 Da        Isoelectric Point: 7.2429

>NTDB_id=636670 LLE34_RS11110 WP_012503975.1 2097139..2097282(-) (pilE) [Neisseria gonorrhoeae strain 10524]
MTGFNDAAGNEKIDTKHLPSTCRDKSSAVCTKHHAPISNAFQENGAF

Nucleotide


Download         Length: 144 bp        

>NTDB_id=636670 LLE34_RS11110 WP_012503975.1 2097139..2097282(-) (pilE) [Neisseria gonorrhoeae strain 10524]
ATGACGGGATTTAATGATGCCGCCGGCAACGAAAAAATCGACACCAAGCACCTGCCGTCAACCTGCCGCGATAAATCATC
TGCCGTTTGCACGAAACACCACGCGCCGATTTCAAATGCTTTCCAAGAAAACGGAGCTTTTTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilE Neisseria gonorrhoeae strain FA1090

70

63.83

0.447