Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilK   Type   Machinery gene
Locus tag   LLE34_RS02360 Genome accession   NZ_CP106769
Coordinates   453575..454186 (+) Length   203 a.a.
NCBI ID   WP_033911077.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain 10524     
Function   type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 448575..459186
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LLE34_RS02335 (LLE34_02335) - 449036..449617 (-) 582 WP_003690895.1 superoxide dismutase -
  LLE34_RS02340 (LLE34_02340) dnaB 449781..451187 (+) 1407 WP_003699622.1 replicative DNA helicase -
  LLE34_RS02345 (LLE34_02345) pilH 451341..452006 (+) 666 WP_003699624.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  LLE34_RS02350 (LLE34_02350) pilV 452038..452649 (+) 612 WP_003699626.1 type IV pilus modification protein PilV Regulator
  LLE34_RS02355 (LLE34_02355) pilJ 452646..453596 (+) 951 WP_003699627.1 PilW family protein Machinery gene
  LLE34_RS02360 (LLE34_02360) pilK 453575..454186 (+) 612 WP_033911077.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  LLE34_RS02365 (LLE34_02365) pilL 454188..454661 (+) 474 WP_172760650.1 PilX family type IV pilin Machinery gene
  LLE34_RS02370 (LLE34_02370) - 454731..455039 (-) 309 WP_025456177.1 AzlD family protein -
  LLE34_RS02375 (LLE34_02375) - 455036..455746 (-) 711 Protein_465 AzlC family ABC transporter permease -
  LLE34_RS02380 (LLE34_02380) dut 455912..456364 (+) 453 WP_003699637.1 dUTP diphosphatase -
  LLE34_RS02385 (LLE34_02385) dapC 456440..457627 (+) 1188 WP_003699639.1 succinyldiaminopimelate transaminase -
  LLE34_RS02390 (LLE34_02390) yaaA 457783..458562 (+) 780 WP_003699641.1 peroxide stress protein YaaA -

Sequence

Protein


Download         Length: 203 a.a.        Molecular weight: 22068.97 Da        Isoelectric Point: 7.5813

>NTDB_id=636622 LLE34_RS02360 WP_033911077.1 453575..454186(+) (pilK) [Neisseria gonorrhoeae strain 10524]
MRKQNALTGIPTSDGQRGFALFIVLMVMIVVAFLVVTAAQSYNTEQRISANESDRKLALSLAEAALREGEFQVLDLEYTA
DSKVTFSENCEKGLCTAVNVRTNNNGNEEAFGNIVVQGKPTVEAVKRSCPAKSGKNSTGLCIDNQGVEYEKGTASVSKMP
RYIIEYLGVKNGQNVYRVTAKAWGKNANTVVVLQSYVGNNDEQ

Nucleotide


Download         Length: 612 bp        

>NTDB_id=636622 LLE34_RS02360 WP_033911077.1 453575..454186(+) (pilK) [Neisseria gonorrhoeae strain 10524]
ATGCGCAAACAGAACGCTTTGACAGGAATCCCGACTTCTGACGGACAGAGGGGGTTCGCACTGTTTATCGTGCTGATGGT
GATGATAGTCGTGGCCTTTTTGGTTGTAACTGCCGCCCAGTCCTACAATACCGAACAGAGGATCAGTGCCAACGAATCAG
ACAGGAAATTGGCTTTGTCTTTAGCCGAGGCGGCTTTGAGGGAAGGCGAATTTCAGGTTTTGGATTTGGAATATACTGCG
GATAGTAAGGTTACATTTAGCGAAAACTGTGAAAAAGGCCTGTGTACCGCAGTGAATGTGCGGACAAATAATAATGGTAA
TGAAGAGGCTTTTGGCAATATCGTGGTGCAAGGCAAGCCTACCGTTGAGGCGGTGAAGCGTTCTTGCCCTGCAAAGTCTG
GCAAAAATTCTACCGGCCTGTGCATTGACAATCAGGGAGTGGAATATGAGAAAGGCACGGCAAGCGTCAGCAAAATGCCG
CGCTATATTATCGAATATTTAGGCGTGAAGAACGGACAAAATGTTTATCGGGTTACTGCCAAGGCTTGGGGTAAGAATGC
CAATACCGTGGTCGTCCTTCAATCTTATGTAGGCAATAATGATGAGCAATAA

Domains

Predicted by InterProScan.

PilX N-terminal (PilX_N)

(17-67)

Type IV pilus assembly protein PilX C-term (PilX)

(92-198)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilK Neisseria gonorrhoeae MS11

95.567

100

0.956