Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   LT989_RS05140 Genome accession   NZ_CP089316
Coordinates   1092008..1092622 (+) Length   204 a.a.
NCBI ID   WP_003831996.1    Uniprot ID   A0A5A9E513
Organism   Citrobacter portucalensis strain K218     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1087008..1097622
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LT989_RS05120 (LT989_05120) - 1087390..1089150 (-) 1761 WP_126956788.1 AAA family ATPase -
  LT989_RS05125 (LT989_05125) matP 1089336..1089788 (+) 453 WP_003831992.1 macrodomain Ter protein MatP -
  LT989_RS05130 (LT989_05130) ompA 1089877..1090923 (-) 1047 WP_126318575.1 porin OmpA -
  LT989_RS05135 (LT989_05135) sulA 1091281..1091790 (-) 510 WP_008784287.1 SOS-induced cell division inhibitor SulA -
  LT989_RS05140 (LT989_05140) sxy/tfoX 1092008..1092622 (+) 615 WP_003831996.1 TfoX/Sxy family DNA transformation protein Regulator
  LT989_RS05145 (LT989_05145) yccS 1092600..1094753 (-) 2154 WP_126956790.1 YccS family putative transporter -
  LT989_RS05150 (LT989_05150) - 1094772..1095218 (-) 447 Protein_1002 YccF domain-containing protein -
  LT989_RS05155 (LT989_05155) helD 1095344..1097398 (+) 2055 WP_126956792.1 DNA helicase IV -

Sequence

Protein


Download         Length: 204 a.a.        Molecular weight: 23168.54 Da        Isoelectric Point: 8.6049

>NTDB_id=636501 LT989_RS05140 WP_003831996.1 1092008..1092622(+) (sxy/tfoX) [Citrobacter portucalensis strain K218]
MKELSYARIYKSQEYLASLGTIHYRSLFGGYSLTVGDTVFAMVANGELYLRACEQSAQYCVQNSPVWLTFIKRGRPLVLN
YYQVNDALWQNQQQLVSLSRYSLDAAVKEKQSRFAQHRLRELPNMTFHLETLLNEAGIKDEGTMRSLGAQMCWLKLRQNN
PALTVKVLYALEGAVGGIHEAALPATRRQELVEWVSSLTPEPGY

Nucleotide


Download         Length: 615 bp        

>NTDB_id=636501 LT989_RS05140 WP_003831996.1 1092008..1092622(+) (sxy/tfoX) [Citrobacter portucalensis strain K218]
ATGAAAGAGCTTTCTTATGCAAGGATCTATAAATCGCAGGAATATCTGGCTTCTCTGGGGACAATTCACTATCGCTCACT
GTTTGGTGGCTACAGTCTGACGGTTGGCGATACGGTCTTTGCCATGGTCGCTAATGGTGAGCTGTATCTTCGCGCCTGTG
AGCAGAGCGCCCAGTATTGTGTACAAAATTCTCCTGTCTGGCTGACATTTATTAAGCGCGGACGTCCTCTTGTACTTAAT
TATTACCAGGTGAACGATGCCCTGTGGCAAAACCAGCAGCAGCTGGTGTCGTTATCGCGATATTCGTTGGATGCTGCGGT
TAAGGAGAAACAAAGTCGCTTTGCCCAGCATCGTCTGCGGGAATTGCCGAATATGACGTTTCATCTGGAGACCCTGCTGA
ATGAAGCTGGAATTAAAGATGAGGGGACCATGCGATCGTTGGGAGCACAAATGTGCTGGCTGAAACTTCGGCAAAATAAC
CCGGCTCTGACGGTAAAAGTACTCTATGCCCTTGAAGGCGCGGTAGGGGGGATACATGAAGCCGCGCTCCCGGCGACGCG
TCGCCAGGAGCTGGTTGAGTGGGTAAGTTCTCTTACGCCGGAACCGGGGTATTAG

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(116-194)

TfoX N-terminal domain (TfoX_N)

(14-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5A9E513

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

67.647

100

0.676