Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilK   Type   Machinery gene
Locus tag   LLE30_RS02340 Genome accession   NZ_CP106765
Coordinates   453808..454419 (+) Length   203 a.a.
NCBI ID   WP_229433526.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain 10500     
Function   type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 448808..459419
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LLE30_RS02315 (LLE30_02315) - 449269..449850 (-) 582 WP_003690895.1 superoxide dismutase -
  LLE30_RS02320 (LLE30_02320) dnaB 450014..451420 (+) 1407 WP_003699622.1 replicative DNA helicase -
  LLE30_RS02325 (LLE30_02325) pilH 451574..452239 (+) 666 WP_003699624.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  LLE30_RS02330 (LLE30_02330) pilV 452271..452882 (+) 612 WP_003699626.1 type IV pilus modification protein PilV Regulator
  LLE30_RS02335 (LLE30_02335) pilJ 452879..453829 (+) 951 WP_229433524.1 PilW family protein Machinery gene
  LLE30_RS02340 (LLE30_02340) pilK 453808..454419 (+) 612 WP_229433526.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  LLE30_RS02345 (LLE30_02345) pilL 454421..454894 (+) 474 WP_172760650.1 PilX family type IV pilin Machinery gene
  LLE30_RS02350 (LLE30_02350) - 454964..455272 (-) 309 WP_025456177.1 AzlD family protein -
  LLE30_RS02355 (LLE30_02355) - 455269..455979 (-) 711 Protein_462 AzlC family ABC transporter permease -
  LLE30_RS02360 (LLE30_02360) dut 456145..456597 (+) 453 WP_003699637.1 dUTP diphosphatase -
  LLE30_RS02365 (LLE30_02365) dapC 456673..457860 (+) 1188 WP_003699639.1 succinyldiaminopimelate transaminase -
  LLE30_RS02370 (LLE30_02370) yaaA 458016..458795 (+) 780 WP_003699641.1 peroxide stress protein YaaA -

Sequence

Protein


Download         Length: 203 a.a.        Molecular weight: 22129.07 Da        Isoelectric Point: 7.5813

>NTDB_id=636478 LLE30_RS02340 WP_229433526.1 453808..454419(+) (pilK) [Neisseria gonorrhoeae strain 10500]
MRKQNALTGIPTSDGQRGFALFIVLMVMIVVAFLVVTAAQSYNTEQRISANESDRKLALSLAEAALREGEFQVLDLEYTA
DSKVTFSENCEKGLCTAVNVRTNNNGNEEAFGNIVVQGKPTVEAVKRFCPAKSGKNSTGLCIDNQGVEYEKGTASVSKMP
RYIIEYLGVKNGQNVYRVTAKAWGKNANTVVVLQSYVGNNDEQ

Nucleotide


Download         Length: 612 bp        

>NTDB_id=636478 LLE30_RS02340 WP_229433526.1 453808..454419(+) (pilK) [Neisseria gonorrhoeae strain 10500]
ATGCGCAAACAGAACGCTTTGACAGGAATCCCGACTTCTGACGGACAGAGGGGGTTCGCACTGTTTATCGTGCTGATGGT
GATGATAGTCGTGGCCTTTTTGGTTGTAACTGCCGCCCAGTCCTACAATACCGAACAGAGGATCAGTGCCAACGAATCAG
ACAGGAAATTGGCTTTGTCTTTAGCCGAGGCGGCTTTGAGGGAAGGCGAATTTCAGGTTTTGGATTTGGAATATACTGCG
GATAGTAAGGTTACATTTAGCGAAAACTGTGAAAAAGGCCTGTGTACCGCAGTGAATGTGCGGACAAATAATAATGGTAA
TGAAGAGGCTTTTGGCAATATCGTGGTGCAAGGCAAGCCTACCGTTGAGGCGGTGAAGCGTTTTTGCCCTGCAAAGTCTG
GCAAAAATTCTACCGGCCTGTGCATTGACAATCAGGGAGTGGAATATGAGAAAGGCACGGCAAGCGTCAGCAAAATGCCG
CGCTATATTATCGAATATTTAGGCGTGAAGAACGGACAAAATGTTTATCGGGTTACTGCCAAGGCTTGGGGTAAGAATGC
CAATACCGTGGTCGTCCTTCAATCTTATGTAGGCAATAATGATGAGCAATAA

Domains

Predicted by InterProScan.

Type IV pilus assembly protein PilX C-term (PilX)

(92-198)

PilX N-terminal (PilX_N)

(17-67)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilK Neisseria gonorrhoeae MS11

95.074

100

0.951