Detailed information NTG0636439

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: N8153_RS18380
• Genome accession: NZ_CP106756
• Coordinates: 3757090..3758082 (-)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain B-JRPT-4119
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 3752090..3763082

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
N8153_RS18360 (N8153_18360)	otnK	3752864..3754126 (+)	1263	WP_000590386.1	3-oxo-tetronate kinase	-
N8153_RS18365 (N8153_18365)	ygbL	3754123..3754761 (+)	639	WP_001278994.1	aldolase	-
N8153_RS18370 (N8153_18370)	ygbM	3754766..3755542 (+)	777	WP_001136924.1	HPr family phosphocarrier protein	-
N8153_RS18375 (N8153_18375)	ygbN	3755631..3756996 (+)	1366	Protein_3593	GntP family transporter	-
N8153_RS18380 (N8153_18380)	rpoS	3757090..3758082 (-)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
N8153_RS18385 (N8153_18385)	nlpD	3758145..3759239 (-)	1095	WP_224692580.1	murein hydrolase activator NlpD	-
N8153_RS18390 (N8153_18390)	pcm	3759424..3760050 (-)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
N8153_RS18395 (N8153_18395)	surE	3760044..3760805 (-)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
N8153_RS18400 (N8153_18400)	truD	3760786..3761835 (-)	1050	WP_000568943.1	tRNA pseudouridine(13) synthase TruD	-
N8153_RS18405 (N8153_18405)	ispF	3761832..3762311 (-)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
N8153_RS18410 (N8153_18410)	ispD	3762311..3763021 (-)	711	WP_000246144.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=636439 N8153_RS18380 WP_000081550.1 3757090..3758082(-) (rpoS) [Escherichia coli strain B-JRPT-4119]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=636439 N8153_RS18380 WP_000081550.1 3757090..3758082(-) (rpoS) [Escherichia coli strain B-JRPT-4119]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGTGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715