Detailed information    

insolico Bioinformatically predicted

Overview

Name   comC   Type   Machinery gene
Locus tag   LUX28_RS14450 Genome accession   NZ_CP089310
Coordinates   2880403..2881155 (-) Length   250 a.a.
NCBI ID   WP_015417928.1    Uniprot ID   -
Organism   Bacillus velezensis strain A4P130     
Function   processing and translocation of ComGC; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2875403..2886155
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LUX28_RS14425 (LUX28_14425) mreC 2875839..2876702 (-) 864 WP_007408166.1 rod shape-determining protein MreC -
  LUX28_RS14430 (LUX28_14430) mreB 2876733..2877746 (-) 1014 WP_003152647.1 cell shape-determining protein MreB -
  LUX28_RS14435 (LUX28_14435) radC 2877838..2878533 (-) 696 WP_007408165.1 RadC family protein -
  LUX28_RS14440 (LUX28_14440) - 2878565..2879134 (-) 570 WP_015417926.1 Maf family protein -
  LUX28_RS14445 (LUX28_14445) - 2879275..2880276 (-) 1002 WP_015417927.1 SPOR domain-containing protein -
  LUX28_RS14450 (LUX28_14450) comC 2880403..2881155 (-) 753 WP_015417928.1 prepilin peptidase Machinery gene
  LUX28_RS14455 (LUX28_14455) - 2881295..2882587 (-) 1293 WP_053573156.1 bifunctional folylpolyglutamate synthase/dihydrofolate synthase -
  LUX28_RS14460 (LUX28_14460) - 2882646..2885288 (-) 2643 WP_020956152.1 valine--tRNA ligase -
  LUX28_RS14465 (LUX28_14465) - 2885741..2885932 (+) 192 WP_053573155.1 hypothetical protein -

Sequence

Protein


Download         Length: 250 a.a.        Molecular weight: 27247.99 Da        Isoelectric Point: 9.4293

>NTDB_id=636416 LUX28_RS14450 WP_015417928.1 2880403..2881155(-) (comC) [Bacillus velezensis strain A4P130]
MLLILFFLGLIFGSFFYTAACRIPLRISVISPRSACSFCRLPLSWGELVPVVSYILQRGRCRNCRAKLSVMYPAAECWTA
CLFTAAGIHFGFSKELLVALLFLSLLMIVTMTDLQYMLIPDKVLLFFLPLFIAGRMFSPLDSWYAGFAGAVCGFFLLVFI
MFVSKGGIGAGDVKLFGVIGLTLGVKLVLIAFFLSVMIGAVYGMCAAARGRLGKKQPFPFAPAISVGSALSYLYGEELFS
FYIKLASGGA

Nucleotide


Download         Length: 753 bp        

>NTDB_id=636416 LUX28_RS14450 WP_015417928.1 2880403..2881155(-) (comC) [Bacillus velezensis strain A4P130]
GTGCTTTTGATTCTGTTTTTTCTCGGCTTGATTTTCGGTTCTTTTTTTTATACAGCAGCGTGCCGTATCCCGCTGCGAAT
CTCGGTTATTTCGCCGCGTTCAGCCTGTTCGTTTTGCCGCTTGCCGCTCTCCTGGGGGGAGCTTGTGCCCGTCGTTTCCT
ATATTCTGCAAAGAGGCAGATGCAGAAACTGTCGTGCGAAGCTGTCGGTTATGTATCCGGCGGCGGAATGCTGGACGGCG
TGTTTATTCACGGCTGCAGGCATTCATTTCGGTTTCTCAAAAGAACTGTTAGTCGCGCTGTTATTTCTGTCTCTGCTCAT
GATTGTTACTATGACGGATCTGCAATATATGCTGATTCCTGACAAGGTTCTGCTGTTTTTTCTTCCGCTTTTCATCGCCG
GCCGTATGTTTTCTCCGCTGGATTCATGGTATGCAGGGTTTGCCGGAGCCGTTTGCGGATTTTTTCTGCTTGTTTTTATC
ATGTTTGTCAGTAAAGGAGGCATCGGCGCAGGTGATGTGAAACTGTTTGGGGTGATCGGCCTGACGCTCGGCGTGAAGCT
CGTGCTCATTGCATTCTTTCTCTCCGTTATGATCGGAGCCGTATACGGTATGTGCGCCGCAGCCCGGGGCAGGCTTGGTA
AAAAGCAGCCATTTCCGTTTGCGCCGGCCATCTCAGTCGGGAGCGCTTTGAGTTATTTATACGGTGAAGAGCTGTTTTCG
TTTTACATCAAGCTCGCTTCAGGCGGGGCTTGA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(8-90)

Type IV leader peptidase family (Peptidase_A24)

(101-204)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comC Bacillus subtilis subsp. subtilis str. 168

58.468

99.2

0.58