Detailed information    

insolico Bioinformatically predicted

Overview

Name   recX   Type   Regulator
Locus tag   LUX28_RS04570 Genome accession   NZ_CP089310
Coordinates   901059..901850 (+) Length   263 a.a.
NCBI ID   WP_053573608.1    Uniprot ID   -
Organism   Bacillus velezensis strain A4P130     
Function   inhibit excessive RecA-mediated recombination (predicted from homology)   
Competence regulation

Genomic Context

Location: 896059..906850
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LUX28_RS04545 (LUX28_04545) - 898053..898937 (+) 885 WP_053573606.1 PhzF family phenazine biosynthesis isomerase -
  LUX28_RS04550 (LUX28_04550) - 899014..899598 (+) 585 WP_053573607.1 nitroreductase -
  LUX28_RS04555 (LUX28_04555) - 899638..899829 (-) 192 WP_003155508.1 YfhD family protein -
  LUX28_RS04560 (LUX28_04560) - 899900..900010 (-) 111 WP_003155504.1 YfhE family protein -
  LUX28_RS04565 (LUX28_04565) - 900068..900967 (-) 900 WP_039252291.1 TIGR01777 family oxidoreductase -
  LUX28_RS04570 (LUX28_04570) recX 901059..901850 (+) 792 WP_053573608.1 recombination regulator RecX Regulator
  LUX28_RS04575 (LUX28_04575) - 901857..902171 (+) 315 WP_007408553.1 YfhH family protein -
  LUX28_RS04580 (LUX28_04580) - 902316..903509 (+) 1194 WP_076983409.1 MFS transporter -
  LUX28_RS04585 (LUX28_04585) - 903549..903938 (-) 390 WP_053573609.1 DUF2606 family protein -
  LUX28_RS04590 (LUX28_04590) - 903901..904812 (-) 912 WP_053573610.1 trypsin-like serine peptidase -
  LUX28_RS04595 (LUX28_04595) - 904960..905112 (-) 153 WP_003155495.1 small, acid-soluble spore protein K -
  LUX28_RS04600 (LUX28_04600) - 905236..905505 (+) 270 WP_003155492.1 YfhJ family protein -
  LUX28_RS04605 (LUX28_04605) - 905633..906160 (+) 528 WP_015417063.1 SH3 domain-containing protein -
  LUX28_RS04610 (LUX28_04610) - 906246..906581 (+) 336 WP_007408558.1 SdpI family protein -

Sequence

Protein


Download         Length: 263 a.a.        Molecular weight: 30976.20 Da        Isoelectric Point: 6.0921

>NTDB_id=636375 LUX28_RS04570 WP_053573608.1 901059..901850(+) (recX) [Bacillus velezensis strain A4P130]
MPFITKISTQKKNTERFNIFLDEKYAFSVDADVLVRFDLKKGKELDELDILEIQYGDDVKKAFNRAVEFLSYRMRSEKEV
RDHLKKKETPDMVISEVIHKLYDYRYLNDKEFAEAYASTHKKTNGKGPDVLFRELKAKGIDDDTIKETLSAFTFDEQIQE
ALKHIGKILKKDKKLSTKEIKQRAQMQLQRKGFPFDVINAALEQTEYENDDEAEMEALKAHAEKAIRKYRYDGSYESGMK
VKQYLFRKGFSIDDIDQFLQEEE

Nucleotide


Download         Length: 792 bp        

>NTDB_id=636375 LUX28_RS04570 WP_053573608.1 901059..901850(+) (recX) [Bacillus velezensis strain A4P130]
ATGCCGTTTATTACAAAAATATCGACCCAAAAGAAAAATACCGAGCGCTTCAACATCTTTCTTGATGAGAAATATGCATT
CAGCGTCGACGCCGACGTGCTTGTGCGTTTTGACCTGAAAAAAGGGAAAGAACTGGACGAGCTTGACATTCTTGAAATCC
AGTACGGCGATGACGTGAAAAAAGCCTTTAACCGCGCCGTAGAATTTTTATCATACCGGATGCGCTCTGAAAAAGAAGTC
CGGGATCATCTGAAGAAAAAAGAAACACCGGACATGGTCATTTCTGAAGTCATCCATAAACTGTACGATTACCGCTACTT
AAATGACAAAGAATTTGCCGAAGCCTATGCGAGCACCCACAAAAAAACAAACGGCAAAGGCCCTGACGTCCTGTTCCGCG
AGCTGAAAGCGAAAGGAATAGACGACGATACCATCAAGGAGACGCTCAGTGCGTTTACATTTGATGAGCAAATACAAGAA
GCGCTGAAACATATCGGCAAAATCCTGAAAAAGGACAAAAAGCTGTCCACAAAAGAGATCAAACAGCGGGCGCAGATGCA
GCTTCAGCGAAAAGGTTTCCCTTTCGACGTCATCAATGCCGCTCTGGAGCAGACGGAGTATGAAAATGATGATGAAGCCG
AGATGGAGGCTCTGAAGGCTCATGCGGAAAAAGCGATCAGGAAATACCGCTATGACGGCAGTTATGAAAGCGGAATGAAG
GTTAAACAGTACTTATTCAGAAAAGGATTCTCGATTGACGATATTGATCAATTCTTGCAGGAAGAGGAGTAA

Domains

Predicted by InterproScan.

RecX family (RecX_HTH2)

(84-206)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recX Bacillus subtilis subsp. subtilis str. 168

79.848

100

0.798