Detailed information NTG0636371

Bioinformatically predicted

Overview

• Name: rapC
• Type: Regulator
• Locus tag: LUX28_RS01995
• Genome accession: NZ_CP089310
• Coordinates: 428058..429206 (+)
• Length: 382 a.a.
• NCBI ID: WP_007410270.1
• Uniprot ID: -
• Organism: Bacillus velezensis strain A4P130
• Function: inhibit the DNA-binding function of ComA (predicted from homology) Competence regulation

Genomic Context

Location: 423058..434206

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LUX28_RS01975 (LUX28_01975)	-	423455..424138 (-)	684	WP_053573733.1	ABC transporter ATP-binding protein	-
LUX28_RS01980 (LUX28_01980)	-	424153..425589 (-)	1437	WP_053573732.1	ABC transporter permease	-
LUX28_RS01985 (LUX28_01985)	-	425802..426485 (+)	684	WP_007410267.1	response regulator transcription factor	-
LUX28_RS01990 (LUX28_01990)	-	426472..427905 (+)	1434	WP_162782989.1	sensor histidine kinase	-
LUX28_RS01995 (LUX28_01995)	rapC	428058..429206 (+)	1149	WP_007410270.1	Rap family tetratricopeptide repeat protein	Regulator
LUX28_RS02000 (LUX28_02000)	phrC	429190..429309 (+)	120	WP_003156334.1	PhrC/PhrF family phosphatase-inhibitory pheromone	Regulator
LUX28_RS02005 (LUX28_02005)	-	429458..429568 (-)	111	WP_369719092.1	YjcZ family sporulation protein	-
LUX28_RS02010 (LUX28_02010)	-	429648..431012 (-)	1365	WP_033575080.1	aspartate kinase	-
LUX28_RS02015 (LUX28_02015)	ceuB	431426..432379 (+)	954	WP_015239156.1	ABC transporter permease	Machinery gene
LUX28_RS02020 (LUX28_02020)	-	432369..433316 (+)	948	WP_014416905.1	iron chelate uptake ABC transporter family permease subunit	-
LUX28_RS02025 (LUX28_02025)	-	433310..434068 (+)	759	WP_053573731.1	ABC transporter ATP-binding protein	-

Sequence

Protein

• Length: 382 a.a.
• Molecular weight: 45475.70 Da
• Isoelectric Point: 4.9916

>NTDB_id=636371 LUX28_RS01995 WP_007410270.1 428058..429206(+) (rapC) [Bacillus velezensis strain A4P130]
MKSGLIPSSAVGQKINEWYRYIRTFSVPDAEILKAEIKQELDHMEPDSNLVLYYSLMEFRHQLMLDYLEPLEKLKIEDQP
TLSEILDNIDNSQAGLKGLLDYYVNFFKGMFEFDKREFISAITYYKQAEKKLAFVSDHVERAEFYFKVAEAYYHMKQTYF
SLIHIKNAYEIYVEQDTYNVRIIQCHFVFGVNLMDERRFEQAAKHFQHALQMAEKEQKAQLVGRALYNLGLCYYNQDRIG
EAIPYFERAVDTFESQRIVNSLPQAYFLITLIYFKLGKKEKASEYHKRGYEYAKETDDPVYTVKFEWLQALYQAKPDEET
ISACFRYLEDKNLYADIEDLALEAAKYYYEQNCFKISSDYFLKVEEARKQIQRSEGLYEIEI

Nucleotide

• Length: 1149 bp

>NTDB_id=636371 LUX28_RS01995 WP_007410270.1 428058..429206(+) (rapC) [Bacillus velezensis strain A4P130]
ATGAAGAGCGGGTTAATTCCTTCTTCAGCAGTCGGGCAGAAAATTAACGAGTGGTATCGATACATCAGAACATTCAGCGT
GCCGGATGCGGAGATCTTGAAGGCCGAGATCAAACAAGAGCTTGACCATATGGAGCCTGATTCGAACTTAGTGCTTTATT
ATTCCCTCATGGAATTTCGCCATCAGCTGATGCTGGACTACTTGGAGCCGCTGGAAAAACTGAAGATAGAAGACCAGCCG
ACCCTGTCGGAAATTCTTGATAACATTGATAACAGCCAGGCCGGCCTCAAAGGGCTTCTCGATTATTACGTCAACTTTTT
CAAAGGCATGTTTGAATTTGATAAAAGAGAATTTATCTCAGCGATTACATATTATAAACAAGCTGAGAAAAAACTGGCCT
TCGTATCGGACCACGTGGAACGGGCGGAGTTTTATTTTAAAGTGGCCGAAGCTTATTATCATATGAAACAAACGTATTTT
TCTTTGATACATATAAAAAACGCTTATGAAATTTACGTAGAGCAGGACACATATAACGTCCGGATCATTCAATGCCATTT
TGTATTCGGCGTCAATTTAATGGATGAAAGGCGCTTTGAACAGGCGGCCAAACATTTTCAGCACGCTCTGCAAATGGCCG
AAAAAGAACAAAAAGCGCAGCTTGTCGGGAGGGCGCTGTATAACCTCGGACTGTGCTACTACAATCAGGACCGCATCGGC
GAAGCGATTCCGTACTTTGAACGGGCGGTCGATACATTTGAATCACAAAGAATCGTCAATTCTCTTCCTCAAGCATATTT
TCTAATCACACTCATTTACTTTAAACTCGGAAAAAAAGAAAAAGCGTCGGAATATCACAAGCGGGGATATGAATATGCTA
AAGAAACAGACGATCCCGTTTACACGGTAAAATTCGAATGGCTGCAGGCTCTGTATCAGGCGAAACCGGATGAGGAGACA
ATCAGCGCGTGTTTCCGTTACCTGGAAGATAAAAATTTATACGCCGATATAGAGGATTTAGCACTAGAAGCAGCTAAATA
TTACTATGAACAAAATTGCTTTAAAATTTCTTCTGACTATTTTCTGAAAGTCGAAGAGGCAAGGAAACAAATACAAAGGA
GTGAGGGTTTGTATGAAATTGAAATCTAA

Domains

Predicted by InterproScan.

• Tetratricopeptide repeat (TPR_12) (223-294)

• response regulator aspartate phosphatase H, N terminal (RapH_N) (6-66)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rapC	Bacillus subtilis subsp. subtilis str. 168	82.461	100	0.825
rapF	Bacillus subtilis subsp. subtilis str. 168	57.105	99.476	0.568