Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   LT988_RS01895 Genome accession   NZ_CP089309
Coordinates   410957..412318 (-) Length   453 a.a.
NCBI ID   WP_232408585.1    Uniprot ID   -
Organism   Thiocapsa bogorovii strain BBS     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 405957..417318
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LT988_RS01880 (LT988_01880) - 406888..408090 (+) 1203 WP_232408582.1 PHB depolymerase family esterase -
  LT988_RS01885 (LT988_01885) - 408356..409351 (-) 996 WP_232408583.1 recombination-associated protein RdgC -
  LT988_RS01890 (LT988_01890) - 409589..410869 (+) 1281 WP_232408584.1 HlyC/CorC family transporter -
  LT988_RS01895 (LT988_01895) radA 410957..412318 (-) 1362 WP_232408585.1 DNA repair protein RadA Machinery gene
  LT988_RS01900 (LT988_01900) - 412604..413872 (+) 1269 WP_232408586.1 cyclopropane-fatty-acyl-phospholipid synthase family protein -
  LT988_RS01905 (LT988_01905) - 414125..415141 (+) 1017 WP_232408587.1 NAD(P)/FAD-dependent oxidoreductase -
  LT988_RS01910 (LT988_01910) - 415176..416123 (+) 948 WP_232408588.1 DUF808 domain-containing protein -
  LT988_RS01915 (LT988_01915) - 416167..416793 (+) 627 WP_232408589.1 histidine phosphatase family protein -

Sequence

Protein


Download         Length: 453 a.a.        Molecular weight: 48077.16 Da        Isoelectric Point: 7.1990

>NTDB_id=636344 LT988_RS01895 WP_232408585.1 410957..412318(-) (radA) [Thiocapsa bogorovii strain BBS]
MSNRKTRSSYVCNACGARQPKWAGQCPDCGAWNSMVETAEIARPAVRGGYAGAAESPRVESLAEVSPEDRVRIQSGIGEL
DRVLGGGLVTGSVVLIGGDPGIGKSTLLLQASASLARHLPVLYVSGEESPQQIGLRAHRLGLAGEGIRLLAETNVESILA
AASQERPRVLVVDSIQTLYTDALQSAPGSVSQVREAAAQLVRFAKQRDTVVFLVGHVTKDGTLAGPRVLEHMVDTVLYFE
GEPGGAFRLVRSVKNRFGAVHELGVFAMGDRGLREVKNPSAIFLSRHDEAVPGSLVMVTREGTRPLLVEVQALVDESPLA
NPRRVALGLDGNRLSMLLAVLHRHGGVAMFNQDVFVNVVGGVRITETAVDLPLVMAVLSSYRDRPLPLDLAVFGEVGLSG
EVRPVPNGPDRLREAAKHGVRRAIVPVGNVPKEGVDGLEITAVKTLAEALDGV

Nucleotide


Download         Length: 1362 bp        

>NTDB_id=636344 LT988_RS01895 WP_232408585.1 410957..412318(-) (radA) [Thiocapsa bogorovii strain BBS]
ATGAGCAACCGAAAGACCCGCAGCAGCTATGTCTGCAACGCCTGCGGTGCGCGTCAGCCGAAGTGGGCGGGTCAGTGCCC
GGACTGCGGGGCCTGGAACAGCATGGTGGAGACCGCGGAGATCGCACGTCCCGCCGTGCGCGGCGGCTACGCGGGCGCGG
CCGAGTCACCGCGCGTGGAGAGCTTGGCCGAGGTCAGCCCCGAAGATCGGGTGCGCATCCAGAGCGGGATCGGCGAGCTC
GATCGCGTGTTGGGCGGCGGCCTGGTGACGGGCTCGGTGGTCTTGATCGGCGGGGATCCGGGGATCGGCAAGTCGACCCT
CTTGCTGCAGGCGAGTGCCTCGCTTGCACGCCACCTGCCGGTGCTCTATGTCAGCGGCGAGGAGTCGCCCCAGCAGATCG
GGCTACGCGCCCATCGGCTCGGACTGGCGGGCGAGGGCATCCGTCTGCTTGCCGAGACCAACGTCGAGTCGATCCTCGCG
GCCGCGTCGCAGGAACGGCCGCGGGTGCTGGTCGTCGATTCCATCCAGACCCTCTATACCGATGCGCTGCAGTCTGCCCC
CGGCTCTGTCTCGCAGGTGCGCGAGGCGGCGGCGCAGCTGGTCCGATTCGCCAAGCAGCGGGATACGGTGGTCTTCCTCG
TCGGCCATGTGACCAAGGACGGCACGCTCGCCGGACCGCGAGTGTTGGAGCACATGGTCGACACCGTGCTCTATTTCGAG
GGCGAGCCCGGCGGCGCCTTTCGCCTGGTGCGCTCGGTGAAGAATCGCTTCGGCGCGGTGCATGAGCTCGGGGTCTTCGC
GATGGGCGACCGCGGCCTGCGCGAGGTGAAGAACCCCTCCGCGATCTTTCTTTCTCGCCACGACGAGGCGGTCCCGGGCA
GTCTGGTCATGGTGACCCGCGAGGGGACGCGCCCGCTCTTGGTCGAGGTGCAGGCGCTGGTGGACGAGAGCCCGCTCGCC
AATCCGCGACGGGTGGCCTTGGGGCTCGACGGCAACCGCCTGTCGATGCTGCTGGCGGTGCTGCACCGTCACGGCGGGGT
GGCCATGTTCAACCAGGATGTCTTCGTCAACGTGGTCGGCGGGGTGCGGATCACCGAGACCGCCGTCGATCTGCCGCTCG
TGATGGCGGTGCTGTCGAGCTATCGGGACCGGCCGCTTCCGTTGGACCTCGCGGTCTTCGGCGAGGTCGGCCTCTCGGGC
GAGGTGCGTCCGGTCCCGAATGGTCCGGATCGGTTACGCGAGGCAGCCAAGCACGGTGTGCGTCGGGCCATCGTACCGGT
CGGGAATGTTCCCAAAGAGGGTGTGGATGGGTTGGAGATCACGGCCGTGAAGACCCTCGCCGAGGCCCTCGACGGGGTCT
GA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(73-221)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(10-37)

Subunit ChlI of Mg-chelatase (ChlI)

(345-429)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

50

100

0.506
  radA Streptococcus pneumoniae Rx1

47.059

100

0.477
  radA Streptococcus pneumoniae D39

47.059

100

0.477
  radA Streptococcus pneumoniae R6

47.059

100

0.477
  radA Streptococcus pneumoniae TIGR4

47.059

100

0.477
  radA Streptococcus mitis NCTC 12261

46.841

100

0.475
  radA Streptococcus mitis SK321

46.841

100

0.475