Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   YBT1518_RS22675 Genome accession   NC_022873
Coordinates   4535810..4537549 (-) Length   579 a.a.
NCBI ID   WP_000947734.1    Uniprot ID   A0A9X5W4K1
Organism   Bacillus thuringiensis YBT-1518     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4530810..4542549
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  YBT1518_RS22645 (YBT1518_23035) - 4531048..4531281 (+) 234 WP_001190211.1 DUF2627 domain-containing protein -
  YBT1518_RS22650 (YBT1518_23040) - 4531331..4532059 (-) 729 WP_000172589.1 glycerophosphodiester phosphodiesterase -
  YBT1518_RS22655 (YBT1518_23045) - 4532110..4532256 (+) 147 WP_001247671.1 YycC family protein -
  YBT1518_RS22660 (YBT1518_23050) - 4532496..4533059 (-) 564 WP_023522992.1 PRK06770 family protein -
  YBT1518_RS22665 (YBT1518_23055) spo0A 4533311..4534105 (-) 795 WP_011110369.1 sporulation transcription factor Spo0A Regulator
  YBT1518_RS22670 (YBT1518_23060) spoIVB 4534393..4535691 (-) 1299 WP_023522993.1 SpoIVB peptidase -
  YBT1518_RS22675 (YBT1518_23065) recN 4535810..4537549 (-) 1740 WP_000947734.1 DNA repair protein RecN Machinery gene
  YBT1518_RS22680 (YBT1518_23070) argR 4537814..4538263 (-) 450 WP_001032580.1 arginine repressor ArgR -
  YBT1518_RS22685 (YBT1518_23075) - 4538406..4539245 (-) 840 WP_000111872.1 TlyA family RNA methyltransferase -
  YBT1518_RS22690 (YBT1518_23080) dxs 4539249..4541141 (-) 1893 WP_000366452.1 1-deoxy-D-xylulose-5-phosphate synthase -
  YBT1518_RS22695 (YBT1518_23085) ispA 4541443..4542333 (-) 891 WP_000150374.1 (2E,6E)-farnesyl diphosphate synthase -

Sequence

Protein


Download         Length: 579 a.a.        Molecular weight: 65839.94 Da        Isoelectric Point: 4.8260

>NTDB_id=63632 YBT1518_RS22675 WP_000947734.1 4535810..4537549(-) (recN) [Bacillus thuringiensis YBT-1518]
MLSELSIRNFAIIEALNISFQKGLTVLSGETGAGKSIIIDAISLLVGGRGSAEFVRYGTEKAEIEGLFYVEDDKHPCIEK
AEELDIEIEDGMIILKRDIAANGKSVCRVNGKLVTLSILKEIGKTLVDIHGQHETQDLMNEERHLFMLDHFDGDRIVKQL
DIYQNVYADYEKLKKQLKSLSENEQQMAHRLDLIQFQHEEIRKADLKMDEENELTEERLQISNFEKIYKALGDAYRSLSA
DGQGLDNVRSAMGQMESITHLDEMYQENHDSIANSYYLLEEVAYQLREKLDMMEYDPNRLDEIETRLNEIRMLKRKYGNT
VEEILAYADKIEQEIFTIENKDVHIETTKKQLKELESVILKEATLLSNMRHELAEHLTNAIHQELKELYMEKTKFEVRIM
KREGNAEEPLVEGAPVRLTADGYDHVEFYISTNPGEPLKPLSKVASGGELSRIILALKSIFSKHQGVASVIFDEVDTGVS
GRVAQAIAEKIYRVSVNSQVLCITHLPQVASMADSHLFIRKQVANDRTITSVTVLTMEDKVTEIARMISGVEITDLTTEH
AKELLTQAHHFKQTAEAIQ

Nucleotide


Download         Length: 1740 bp        

>NTDB_id=63632 YBT1518_RS22675 WP_000947734.1 4535810..4537549(-) (recN) [Bacillus thuringiensis YBT-1518]
TTGTTATCGGAATTATCGATTAGAAACTTTGCTATTATTGAAGCATTAAATATTTCTTTTCAAAAAGGTTTAACGGTTTT
AAGCGGTGAAACAGGGGCCGGAAAATCGATTATTATTGATGCGATTAGTTTACTTGTAGGTGGCCGTGGGTCAGCAGAAT
TTGTTCGATATGGAACAGAAAAGGCTGAGATTGAAGGGCTGTTTTATGTTGAAGATGATAAGCATCCATGTATTGAAAAG
GCAGAAGAGTTAGATATAGAAATAGAAGATGGCATGATTATTTTAAAGCGTGATATTGCTGCGAACGGGAAGAGTGTATG
TCGTGTAAATGGGAAGCTTGTTACACTTAGCATATTAAAAGAAATTGGGAAAACACTTGTTGATATTCATGGACAGCATG
AAACGCAAGATTTAATGAATGAAGAACGACATCTGTTTATGCTTGATCATTTTGATGGGGATCGAATCGTTAAACAACTA
GACATATATCAAAACGTATACGCTGACTATGAAAAATTAAAAAAACAATTGAAATCGTTAAGTGAAAATGAACAACAGAT
GGCACATCGCTTAGATTTAATTCAATTTCAGCATGAAGAAATTCGCAAAGCCGATTTAAAGATGGATGAAGAAAATGAAT
TAACTGAGGAACGATTGCAAATTTCTAATTTTGAAAAGATTTATAAAGCATTAGGTGATGCATATCGTTCATTGAGTGCT
GACGGACAAGGATTAGATAATGTAAGAAGCGCAATGGGACAAATGGAAAGTATTACACATTTAGATGAAATGTATCAAGA
GAATCATGATTCAATTGCAAATAGCTATTACTTATTAGAAGAGGTTGCATATCAACTGAGAGAAAAGCTCGATATGATGG
AATATGATCCAAATCGTTTAGATGAAATCGAAACACGTTTGAATGAAATTCGTATGCTAAAGAGAAAATATGGAAATACT
GTAGAAGAGATTTTAGCGTATGCAGATAAAATTGAACAAGAAATATTTACAATTGAAAATAAAGACGTTCATATTGAAAC
GACGAAGAAACAGTTGAAGGAATTAGAAAGTGTTATTCTGAAAGAAGCAACGTTGTTAAGTAATATGCGTCATGAGCTTG
CAGAACACCTTACAAATGCAATTCATCAGGAATTAAAAGAATTATATATGGAAAAAACGAAATTTGAAGTGAGAATTATG
AAGAGAGAAGGAAATGCAGAAGAACCCCTTGTAGAAGGTGCACCGGTAAGACTTACGGCGGATGGTTACGATCATGTGGA
ATTTTATATTTCGACGAACCCAGGAGAGCCGCTAAAACCACTTTCAAAGGTTGCTTCTGGCGGAGAGTTATCTCGTATCA
TTTTAGCTTTAAAAAGCATTTTTTCTAAGCATCAAGGGGTTGCATCTGTTATTTTTGATGAAGTGGATACGGGTGTAAGT
GGCCGGGTCGCACAGGCTATTGCTGAAAAAATTTATCGAGTATCAGTAAACTCGCAAGTACTTTGTATTACGCACTTACC
TCAAGTAGCTTCAATGGCAGATTCGCATTTATTTATTCGAAAACAAGTAGCGAATGATCGGACAATTACATCAGTTACTG
TTTTAACTATGGAGGATAAAGTAACAGAAATAGCTCGAATGATTTCTGGTGTGGAAATCACAGATTTAACGACGGAGCAT
GCGAAAGAATTACTTACGCAAGCGCATCATTTTAAACAGACAGCAGAGGCTATCCAGTAA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-521)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

60.104

100

0.601

Multiple sequence alignment