Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   YBT1518_RS21825 Genome accession   NC_022873
Coordinates   4379332..4379766 (-) Length   144 a.a.
NCBI ID   WP_000811494.1    Uniprot ID   A0A9Q6M5X1
Organism   Bacillus thuringiensis YBT-1518     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 4374332..4384766
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  YBT1518_RS21810 (YBT1518_22185) - 4375510..4376067 (+) 558 WP_000062063.1 PadR family transcriptional regulator -
  YBT1518_RS21815 (YBT1518_22190) metE 4376579..4378867 (+) 2289 WP_023522938.1 5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase -
  YBT1518_RS21820 (YBT1518_22195) - 4378906..4379295 (-) 390 WP_000424024.1 competence protein ComJ -
  YBT1518_RS21825 (YBT1518_22200) nucA/comI 4379332..4379766 (-) 435 WP_000811494.1 DNA-entry nuclease Machinery gene
  YBT1518_RS21830 (YBT1518_22205) - 4379993..4380742 (+) 750 WP_000388467.1 DUF3967 domain-containing protein -
  YBT1518_RS21835 (YBT1518_22210) kinB 4380781..4382055 (-) 1275 WP_000420372.1 sporulation sensor histidine kinase KinB -
  YBT1518_RS21840 (YBT1518_22215) - 4382366..4382566 (+) 201 WP_000929276.1 hypothetical protein -
  YBT1518_RS21845 (YBT1518_22220) - 4382689..4383852 (+) 1164 WP_023522939.1 aminotransferase A -

Sequence

Protein


Download         Length: 144 a.a.        Molecular weight: 16054.43 Da        Isoelectric Point: 8.4331

>NTDB_id=63630 YBT1518_RS21825 WP_000811494.1 4379332..4379766(-) (nucA/comI) [Bacillus thuringiensis YBT-1518]
MKQLKGIIISIIAILSILVAVYEVLVPEETSVKKTNTYDQVLEFPKERYPETGKHITDAIKEGHSEVCTIDRGGAADRRK
LSLAPYPSKKGYDRDEWPMAMCKEGGKGAHIEYISPADNRGAGSWVGNKLDKYPDGTRVKFEVK

Nucleotide


Download         Length: 435 bp        

>NTDB_id=63630 YBT1518_RS21825 WP_000811494.1 4379332..4379766(-) (nucA/comI) [Bacillus thuringiensis YBT-1518]
ATGAAGCAATTAAAAGGTATTATCATTTCAATTATTGCAATTCTGTCTATTTTAGTAGCAGTTTATGAAGTACTTGTGCC
AGAGGAAACAAGTGTAAAGAAAACGAATACGTATGATCAAGTGTTAGAATTTCCGAAAGAACGTTATCCAGAGACAGGAA
AACATATTACGGATGCTATAAAAGAAGGGCATTCAGAAGTTTGTACAATCGATCGTGGTGGTGCTGCAGATAGAAGGAAA
TTGTCGTTAGCACCATATCCATCAAAAAAAGGGTATGATCGTGATGAATGGCCAATGGCGATGTGCAAGGAAGGCGGAAA
AGGAGCACATATTGAATATATAAGTCCGGCGGATAACCGGGGAGCAGGCTCTTGGGTAGGGAATAAGTTAGATAAATATC
CAGATGGTACGCGTGTGAAATTTGAAGTGAAGTAG

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(48-140)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

69.912

78.472

0.549

Multiple sequence alignment