Detailed information    

insolico Bioinformatically predicted

Overview

Name   kre   Type   Regulator
Locus tag   YBT1518_RS21780 Genome accession   NC_022873
Coordinates   4370119..4370577 (+) Length   152 a.a.
NCBI ID   WP_000804864.1    Uniprot ID   -
Organism   Bacillus thuringiensis YBT-1518     
Function   regulation of regulators (predicted from homology)   
Competence regulation

Genomic Context

Location: 4365119..4375577
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  YBT1518_RS21765 (YBT1518_22140) - 4365788..4366024 (+) 237 WP_000283738.1 hypothetical protein -
  YBT1518_RS21770 (YBT1518_22145) - 4366186..4368294 (-) 2109 WP_023522932.1 polyphosphate kinase -
  YBT1518_RS21775 (YBT1518_22150) - 4368403..4369977 (-) 1575 WP_043924702.1 Ppx/GppA family phosphatase -
  YBT1518_RS21780 (YBT1518_22155) kre 4370119..4370577 (+) 459 WP_000804864.1 YkyB family protein Regulator
  YBT1518_RS21785 (YBT1518_22160) - 4370609..4371271 (-) 663 WP_023522934.1 YkyA family protein -
  YBT1518_RS21790 (YBT1518_22165) - 4371885..4372538 (-) 654 WP_023522935.1 diguanylate cyclase domain-containing protein -
  YBT1518_RS21795 (YBT1518_22170) - 4372702..4372935 (+) 234 WP_000939446.1 SPP1 phage holin family protein -
  YBT1518_RS21800 (YBT1518_22175) - 4372967..4373467 (-) 501 WP_023522936.1 hypothetical protein -
  YBT1518_RS21805 (YBT1518_22180) - 4373879..4375420 (+) 1542 WP_023522937.1 MDR family MFS transporter -

Sequence

Protein


Download         Length: 152 a.a.        Molecular weight: 17757.49 Da        Isoelectric Point: 10.6793

>NTDB_id=63629 YBT1518_RS21780 WP_000804864.1 4370119..4370577(+) (kre) [Bacillus thuringiensis YBT-1518]
MKPSQPQSQLQNQHSINRLAQSIFVVNRHAKAATNPKYLYWLKKTALERLIAEKKAIKEGLHFSRNPRFSQQQSDVLIRL
GDYFFHIPPTKEDFRILPHLGHLESSYRNPKTTLSLTVAKKTLQDYIGPEALKQEKKLSEPVPWYSRTYTKK

Nucleotide


Download         Length: 459 bp        

>NTDB_id=63629 YBT1518_RS21780 WP_000804864.1 4370119..4370577(+) (kre) [Bacillus thuringiensis YBT-1518]
ATGAAACCTTCACAACCACAATCTCAATTACAAAACCAACATTCTATTAATCGACTAGCTCAATCTATTTTCGTTGTGAA
TCGTCATGCTAAAGCAGCTACTAATCCTAAATATTTATACTGGTTAAAAAAGACAGCTTTAGAACGTTTGATTGCTGAAA
AAAAAGCAATTAAAGAAGGATTACATTTTTCTAGAAACCCACGTTTTAGCCAACAACAATCTGATGTCCTTATACGTTTA
GGCGATTATTTTTTCCACATCCCTCCTACGAAAGAAGATTTTCGAATTCTACCGCATCTTGGTCATCTTGAATCCTCCTA
TCGAAATCCGAAAACAACCTTATCTTTAACAGTAGCAAAAAAAACACTTCAAGATTATATTGGTCCTGAAGCATTGAAAC
AAGAAAAAAAATTAAGTGAACCTGTTCCATGGTATAGTCGTACTTATACAAAAAAATAA

Domains

Predicted by InterproScan.

YkyB-like protein (YkyB)

(16-128)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  kre Bacillus subtilis subsp. subtilis str. 168

64.655

76.316

0.493

Multiple sequence alignment