NTDB

Overview

Name	radA	Type	Machinery gene
Locus tag	LS633_RS05825	Genome accession	NZ_CP089304
Coordinates	1228235..1229602 (-)	Length	455 a.a.
NCBI ID	WP_210705122.1	Uniprot ID	-
Organism	Pseudomonas sp. NIBR-H-19
Function	homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1223235..1234602

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LS633_RS05800 (LS633_05800)	-	1223352..1224062 (+)	711	WP_232392540.1	GntR family transcriptional regulator	-
LS633_RS05805 (LS633_05805)	yjiA	1224185..1225156 (-)	972	WP_210705128.1	GTPase	-
LS633_RS05810 (LS633_05810)	-	1225319..1225516 (-)	198	WP_042561171.1	YbdD/YjiX family protein	-
LS633_RS05815 (LS633_05815)	-	1225532..1227598 (-)	2067	WP_210705126.1	carbon starvation CstA family protein	-
LS633_RS05820 (LS633_05820)	-	1227758..1228126 (+)	369	WP_210705124.1	PilZ domain-containing protein	-
LS633_RS05825 (LS633_05825)	radA	1228235..1229602 (-)	1368	WP_210705122.1	DNA repair protein RadA	Machinery gene
LS633_RS05830 (LS633_05830)	-	1229648..1230193 (-)	546	WP_210705120.1	ankyrin repeat domain-containing protein	-
LS633_RS05835 (LS633_05835)	-	1230253..1231794 (-)	1542	WP_210705119.1	catalase	-
LS633_RS05840 (LS633_05840)	mscL	1232081..1232494 (+)	414	WP_042561176.1	large-conductance mechanosensitive channel protein MscL	-
LS633_RS05845 (LS633_05845)	-	1232540..1233316 (-)	777	WP_210704139.1	ferredoxin--NADP reductase	-
LS633_RS05850 (LS633_05850)	-	1233635..1234348 (+)	714	WP_210704140.1	autoinducer binding domain-containing protein	-

Sequence

Protein

Download Length: 455 a.a. Molecular weight: 48819.28 Da Isoelectric Point: 6.8987

                                >NTDB_id=636276 LS633_RS05825 WP_210705122.1 1228235..1229602(-) (radA) [Pseudomonas sp. NIBR-H-19]

MAKAKRMYGCTECGATFPKWAGQCGECGAWNTLTETMIESGGATAPSGRTGWTGQQAQIKTLAEVSIEEIPRFSTASSEL

DRVLGGGLVDGSVVLIGGDPGIGKSTILLQTLCNLAKSMPALYVTGEESQQQVAMRARRLGLPQDQLRVMTETCIETIIA

TARQEKPKVMVIDSIQTIFTEQLQSAPGGVSQVRESAALLVRYAKQSGTAIFLVGHVTKEGALAGPRVLEHMVDTVLYFE

GESDGRLRLLRAVKNRFGAVNELGVFGMTDKGLKEVSNPSAIFLTRAQEEVPGSVVMATWEGTRPMLVEVQALVDDSHLA

NPRRVTLGLDQNRLAMLLAVLHRHGGIPTHDQDVFLNVVGGVKVLETASDLALMAAVMSSLRNRPLPHDLLVFGEVGLSG

EVRPVPSGQERLKEAAKHGFKRAIVPKGNAPKESPPGLQIIAVTRLEQALDALFE

Nucleotide

Download Length: 1368 bp

                                >NTDB_id=636276 LS633_RS05825 WP_210705122.1 1228235..1229602(-) (radA) [Pseudomonas sp. NIBR-H-19]

ATGGCCAAGGCCAAGCGCATGTACGGCTGCACCGAGTGCGGCGCAACCTTTCCCAAGTGGGCCGGCCAGTGTGGCGAGTG

CGGTGCCTGGAATACGCTGACCGAAACCATGATCGAGAGCGGCGGCGCGACGGCGCCCTCCGGACGCACCGGATGGACCG

GGCAGCAGGCGCAGATCAAAACCCTGGCCGAAGTCAGCATCGAAGAGATTCCACGGTTTTCCACAGCCTCCAGTGAGCTG

GATCGTGTGCTGGGCGGAGGCTTGGTCGATGGCTCGGTGGTGTTGATCGGCGGCGACCCGGGTATCGGCAAGTCGACGAT

TCTGTTGCAGACCCTGTGCAACCTCGCCAAAAGCATGCCGGCGCTGTACGTCACCGGTGAAGAATCCCAACAGCAAGTGG

CCATGCGCGCCCGCCGCCTCGGTTTGCCTCAGGATCAGCTACGGGTGATGACCGAAACCTGCATCGAGACCATCATCGCC

ACGGCACGTCAGGAAAAACCCAAGGTGATGGTGATCGACTCGATCCAGACGATCTTCACCGAACAACTGCAATCGGCGCC

CGGCGGCGTGTCTCAGGTGCGCGAGAGTGCGGCGTTGCTGGTGCGCTATGCCAAGCAGAGCGGCACGGCGATTTTCCTCG

TCGGCCACGTGACCAAGGAAGGCGCGCTTGCCGGCCCGCGCGTGCTTGAGCACATGGTCGACACCGTGCTGTATTTCGAA

GGCGAATCCGATGGCCGTTTGCGTTTGCTGCGGGCGGTGAAAAACCGCTTCGGCGCCGTCAACGAGTTGGGCGTGTTCGG

CATGACCGACAAGGGTTTGAAAGAGGTCTCCAACCCTTCGGCGATTTTTCTCACGCGCGCTCAGGAAGAAGTCCCGGGCA

GCGTGGTGATGGCGACGTGGGAAGGCACCCGGCCGATGCTGGTGGAAGTGCAGGCGCTGGTCGATGACAGTCATCTGGCC

AACCCGCGCCGTGTGACGCTGGGTCTGGATCAGAACCGATTGGCGATGTTACTGGCGGTTTTGCATCGCCATGGCGGCAT

ACCGACTCACGATCAGGATGTGTTCCTCAACGTGGTGGGTGGGGTGAAGGTGCTGGAAACCGCATCCGACCTGGCGCTGA

TGGCGGCCGTGATGTCGAGCCTGCGCAATCGGCCGTTGCCCCACGACCTGCTGGTGTTTGGCGAAGTCGGGTTGTCCGGC

GAAGTGCGCCCGGTACCAAGCGGTCAGGAGCGGTTGAAGGAAGCGGCCAAGCATGGTTTCAAACGCGCCATTGTGCCGAA

GGGCAACGCGCCGAAGGAATCACCGCCCGGGCTGCAGATCATTGCCGTGACCCGACTGGAACAAGCCCTCGACGCGCTTT

TCGAATAA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(75-221)

Subunit ChlI of Mg-chelatase (ChlI)

(353-429)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
radA	Bacillus subtilis subsp. subtilis str. 168	49.234	100	0.495
radA	Streptococcus mitis SK321	46.711	100	0.468
radA	Streptococcus mitis NCTC 12261	46.491	100	0.466
radA	Streptococcus pneumoniae Rx1	46.491	100	0.466
radA	Streptococcus pneumoniae D39	46.491	100	0.466
radA	Streptococcus pneumoniae R6	46.491	100	0.466
radA	Streptococcus pneumoniae TIGR4	46.491	100	0.466

Detailed information NTG0636276