Detailed information NTG0636251

Bioinformatically predicted

Overview

• Name: radA
• Type: Machinery gene
• Locus tag: LRO18_RS01600
• Genome accession: NZ_CP089303
• Coordinates: 348365..349738 (+)
• Length: 457 a.a.
• NCBI ID: WP_003667336.1
• Uniprot ID: A0A2R7DVQ1
• Organism: Limosilactobacillus reuteri strain VHProbi M07
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 343365..354738

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LRO18_RS01570 (LRO18_01570)	-	343641..344390 (+)	750	WP_003667324.1	amino acid ABC transporter ATP-binding protein	-
LRO18_RS01575 (LRO18_01575)	-	344406..345197 (+)	792	WP_003667327.1	transporter substrate-binding domain-containing protein	-
LRO18_RS01580 (LRO18_01580)	-	345305..346645 (-)	1341	WP_003667329.1	aminopeptidase C	-
LRO18_RS01585 (LRO18_01585)	rpiA	346674..347357 (-)	684	WP_003666281.1	ribose-5-phosphate isomerase RpiA	-
LRO18_RS01590 (LRO18_01590)	-	347369..347665 (-)	297	WP_011953394.1	GNAT family N-acetyltransferase	-
LRO18_RS01595 (LRO18_01595)	-	347804..348340 (+)	537	WP_003667334.1	dUTP diphosphatase	-
LRO18_RS01600 (LRO18_01600)	radA	348365..349738 (+)	1374	WP_003667336.1	DNA repair protein RadA	Machinery gene
LRO18_RS01605 (LRO18_01605)	-	349757..350908 (+)	1152	WP_003667337.1	PIN/TRAM domain-containing protein	-
LRO18_RS01610 (LRO18_01610)	cysS	351283..352695 (+)	1413	WP_003673191.1	cysteine--tRNA ligase	-
LRO18_RS01615 (LRO18_01615)	-	352707..353120 (+)	414	WP_003667341.1	Mini-ribonuclease 3	-
LRO18_RS01620 (LRO18_01620)	rlmB	353110..353859 (+)	750	WP_003667343.1	23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB	-
LRO18_RS01625 (LRO18_01625)	rpmG	353925..354074 (+)	150	WP_003666293.1	50S ribosomal protein L33	-
LRO18_RS01630 (LRO18_01630)	secE	354086..354262 (+)	177	WP_003666294.1	preprotein translocase subunit SecE	-

Sequence

Protein

• Length: 457 a.a.
• Molecular weight: 49960.22 Da
• Isoelectric Point: 8.1257

>NTDB_id=636251 LRO18_RS01600 WP_003667336.1 348365..349738(+) (radA) [Limosilactobacillus reuteri strain VHProbi M07]
MAKVRTQYVCQNCGYNSPRYLGRCPNCGEWNTLVEEQVEANSAPTKKATTTLTGLVAKPQKINEIDSTETPRVKTKLNEL
NRVLGGGIVPGSLILIGGDPGIGKSTLLLQVSGQLSDEHHRVLYVSGEESGTQIKMRAERLKVAGDDFYVYPETNMDSIR
DTIRDLKPEYVVIDSVQTMQATDVSSAIGSVSQIREVTAQLMQIAKSNNITIFVVGHVTKGGAIAGPKILEHMVDTVLYF
EGDLHHTYRILRSVKNRFGSTNELGIFEMHTNGLTEVKNPSEIFLEERLHDATGSAVVVSLEGTRPILVEIQALVTPTVY
GNAQRTATGLSRNRVSLIMAVLEKRANLMLQNQDAYLKAAGGVKLDEPAIDLAIAVSIASSYRDKGTQPTDAFVGEVGLT
GEIRRVNRIEQRVAEAEKLGFKRIFIPKNNLKGWKPSTNIQVIGVSTLKEALYLALG

Nucleotide

• Length: 1374 bp

>NTDB_id=636251 LRO18_RS01600 WP_003667336.1 348365..349738(+) (radA) [Limosilactobacillus reuteri strain VHProbi M07]
ATGGCAAAAGTTCGAACACAATATGTTTGCCAAAACTGTGGTTACAACTCACCACGCTACTTAGGCCGGTGTCCAAACTG
TGGTGAGTGGAATACTTTAGTAGAAGAACAAGTAGAAGCCAATTCTGCACCAACAAAAAAAGCAACCACCACCTTAACCG
GCTTAGTTGCCAAACCACAGAAAATTAATGAGATTGATAGTACAGAGACTCCCCGCGTAAAAACAAAATTGAACGAGTTA
AATCGTGTTTTAGGTGGGGGAATCGTTCCAGGATCACTAATTCTAATTGGTGGGGATCCTGGAATCGGGAAATCTACCCT
CCTTTTACAAGTTTCTGGACAATTGAGCGATGAGCATCACCGAGTTTTATATGTGTCTGGAGAAGAAAGTGGGACACAAA
TTAAAATGCGGGCGGAACGGTTGAAGGTTGCTGGAGATGACTTTTATGTGTATCCAGAAACGAATATGGATAGTATTCGG
GATACTATTCGTGACCTCAAGCCAGAGTATGTCGTTATTGACTCCGTGCAAACGATGCAGGCAACTGATGTAAGTTCCGC
GATTGGGAGTGTATCGCAAATTCGTGAAGTTACCGCCCAGTTAATGCAAATTGCTAAAAGTAATAACATTACGATTTTTG
TTGTTGGTCATGTGACAAAGGGTGGTGCAATCGCTGGTCCAAAGATTTTAGAGCACATGGTTGACACGGTTTTGTATTTT
GAAGGAGATCTGCACCATACATATCGTATTTTGCGATCAGTGAAAAATCGATTTGGTTCAACCAACGAGCTTGGTATTTT
CGAGATGCATACAAATGGGCTGACGGAAGTAAAAAATCCATCAGAAATCTTTTTAGAGGAACGATTACATGATGCAACTG
GTTCAGCGGTGGTTGTTTCATTAGAAGGAACGCGACCGATTTTAGTGGAAATTCAGGCGCTGGTAACACCGACCGTTTAT
GGAAATGCACAGCGAACTGCTACCGGTTTGAGTCGAAACCGAGTATCATTGATAATGGCAGTATTAGAGAAACGTGCTAA
CCTAATGCTTCAAAATCAAGATGCTTACTTAAAAGCAGCTGGGGGCGTTAAGTTAGATGAGCCAGCGATTGATTTAGCAA
TTGCGGTAAGTATTGCCTCTAGTTACCGGGATAAAGGTACCCAACCAACTGACGCATTTGTCGGTGAAGTAGGTTTAACT
GGGGAAATTCGTCGGGTAAACCGCATTGAACAGCGGGTTGCTGAAGCAGAAAAACTTGGATTTAAACGGATCTTTATTCC
TAAAAATAATTTAAAGGGTTGGAAACCGTCAACTAATATTCAAGTAATTGGTGTCTCAACCCTGAAAGAAGCGTTATATT
TAGCGTTGGGGTAA

Domains

Predicted by InterproScan.

• Rubredoxin metal binding domain (Zn_ribbon_LapB) (8-35)

• AAA domain (AAA_25) (65-222)

• Subunit ChlI of Mg-chelatase (ChlI) (363-430)

3D structure

• AlphaFold DB: A0A2R7DVQ1

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
radA	Streptococcus mitis SK321	66.593	98.906	0.659
radA	Streptococcus mitis NCTC 12261	66.593	98.906	0.659
radA	Streptococcus pneumoniae Rx1	66.372	98.906	0.656
radA	Streptococcus pneumoniae D39	66.372	98.906	0.656
radA	Streptococcus pneumoniae R6	66.372	98.906	0.656
radA	Streptococcus pneumoniae TIGR4	66.372	98.906	0.656
radA	Bacillus subtilis subsp. subtilis str. 168	63.02	100	0.63