Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   YBT1518_RS13550 Genome accession   NC_022873
Coordinates   2650849..2651127 (+) Length   92 a.a.
NCBI ID   WP_000842216.1    Uniprot ID   A0A9W5QHH7
Organism   Bacillus thuringiensis YBT-1518     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 2645849..2656127
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  YBT1518_RS13530 (YBT1518_13485) - 2646595..2647197 (+) 603 WP_023521942.1 hypothetical protein -
  YBT1518_RS13535 (YBT1518_13490) - 2647506..2648687 (+) 1182 WP_023521943.1 agmatine/peptidylarginine deiminase -
  YBT1518_RS37085 - 2648857..2649060 (-) 204 WP_157762862.1 hypothetical protein -
  YBT1518_RS13540 (YBT1518_13500) - 2649204..2649455 (-) 252 WP_000827555.1 response regulator transcription factor -
  YBT1518_RS13545 (YBT1518_13505) - 2649831..2650708 (+) 878 Protein_2670 helix-turn-helix domain-containing protein -
  YBT1518_RS13550 (YBT1518_13510) abrB 2650849..2651127 (+) 279 WP_000842216.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  YBT1518_RS13555 (YBT1518_13515) - 2651652..2652902 (+) 1251 WP_001032615.1 hypothetical protein -
  YBT1518_RS13560 (YBT1518_13520) - 2652970..2653728 (+) 759 WP_000347983.1 TSUP family transporter -
  YBT1518_RS13565 (YBT1518_13525) - 2653981..2654640 (+) 660 Protein_2674 CatB-related O-acetyltransferase -

Sequence

Protein


Download         Length: 92 a.a.        Molecular weight: 10378.28 Da        Isoelectric Point: 10.0092

>NTDB_id=63622 YBT1518_RS13550 WP_000842216.1 2650849..2651127(+) (abrB) [Bacillus thuringiensis YBT-1518]
MKSRGITRKADSMGRIVIPMEIRRSLGIVEKDSLEMFIEEDQIILRKYQSPRACALTGDISDSNISLANGKIIVSPNGME
LLIKKLQQYLLK

Nucleotide


Download         Length: 279 bp        

>NTDB_id=63622 YBT1518_RS13550 WP_000842216.1 2650849..2651127(+) (abrB) [Bacillus thuringiensis YBT-1518]
ATGAAATCAAGAGGAATTACTCGTAAAGCAGATAGCATGGGGCGTATTGTTATTCCAATGGAAATAAGACGGAGTTTAGG
AATTGTAGAAAAAGATTCTCTTGAAATGTTTATAGAAGAGGACCAGATTATTCTACGAAAATATCAATCACCAAGAGCTT
GTGCACTTACAGGGGATATTTCAGACAGCAATATTTCGTTAGCGAATGGGAAGATTATTGTAAGTCCAAACGGGATGGAA
CTGTTAATAAAGAAGTTACAGCAATATCTTTTAAAATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(53-89)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(9-52)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

50

97.826

0.489

Multiple sequence alignment