Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   LSG31_RS06415 Genome accession   NZ_CP089291
Coordinates   1364451..1365821 (+) Length   456 a.a.
NCBI ID   WP_347438556.1    Uniprot ID   -
Organism   Fodinisporobacter ferrooxydans strain MYW30-H2     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1359451..1370821
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LSG31_RS06405 (LSG31_06390) - 1362614..1362910 (-) 297 WP_347438554.1 hypothetical protein -
  LSG31_RS06410 (LSG31_06395) - 1363142..1364194 (-) 1053 WP_347438555.1 tellurite resistance/C4-dicarboxylate transporter family protein -
  LSG31_RS06415 (LSG31_06400) radA 1364451..1365821 (+) 1371 WP_347438556.1 DNA repair protein RadA Machinery gene
  LSG31_RS06420 (LSG31_06405) disA 1365827..1366906 (+) 1080 WP_347438557.1 DNA integrity scanning diadenylate cyclase DisA -
  LSG31_RS06425 (LSG31_06410) pssA 1366946..1367665 (+) 720 WP_347438558.1 CDP-diacylglycerol--serine O-phosphatidyltransferase -
  LSG31_RS06430 (LSG31_06415) - 1367745..1368827 (+) 1083 WP_347438559.1 PIN/TRAM domain-containing protein -
  LSG31_RS06435 (LSG31_06420) ispD 1369045..1369770 (+) 726 WP_347438560.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -
  LSG31_RS06440 (LSG31_06425) ispF 1369739..1370227 (+) 489 WP_347438561.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -

Sequence

Protein


Download         Length: 456 a.a.        Molecular weight: 50000.46 Da        Isoelectric Point: 7.0045

>NTDB_id=636211 LSG31_RS06415 WP_347438556.1 1364451..1365821(+) (radA) [Fodinisporobacter ferrooxydans strain MYW30-H2]
MAKTKSKTKFICQDCGYESAKWLGKCPGCSQWNSFAEEVVPTTSERIPSNQHPQGKPESIAAIDTGQEPRTSTGYQEFDR
VLGGGIVSGSLVLVGGDPGIGKSTLLLQTSFSVAKQGKKVLYVTGEESSKQIKLRADRLQTIADELFILPATDLEFIETQ
IRHLQPDFVMIDSIQTMYLPHISSAPGSVSQVRECTGYLLRISKSLQMAIFIVGHVTKEGTIAGPRLLEHMVDAVLYFEG
ERHHSYRILRAVKNRFGSTNEMGIFEMRELGLSEVRNPSELFLAERPQGVAGSAVVASMEGTRPLLVEIQALLTPTAYGN
PRRMAAGVENSRVALLMAVLEKRVGLFLQNQDAYVNVAGGVRLDEPAVDLGIAVSIGSSFRNQSIHPYDVFIGEIGLTGE
IRAVSRIEQRVKEALKLGFHRCFLPIGNMRGWKPPEGIQIIAVETLQDAFHFALEG

Nucleotide


Download         Length: 1371 bp        

>NTDB_id=636211 LSG31_RS06415 WP_347438556.1 1364451..1365821(+) (radA) [Fodinisporobacter ferrooxydans strain MYW30-H2]
ATGGCAAAGACAAAATCCAAAACGAAGTTTATCTGTCAAGATTGCGGATATGAATCTGCAAAATGGCTGGGGAAGTGTCC
AGGATGCTCGCAGTGGAATTCCTTTGCAGAAGAAGTCGTTCCAACAACGTCAGAGCGCATCCCGTCCAATCAGCATCCGC
AAGGAAAGCCTGAGTCAATTGCTGCTATTGATACTGGGCAGGAACCGAGAACTTCTACGGGATATCAGGAATTCGACCGG
GTATTGGGCGGCGGAATTGTTTCCGGTTCATTAGTGCTTGTCGGTGGCGACCCTGGTATTGGAAAATCAACGTTGCTTCT
GCAAACTTCATTTTCTGTAGCAAAGCAAGGGAAAAAAGTACTATATGTGACGGGAGAGGAATCTTCCAAACAAATCAAGC
TGCGGGCGGACCGTTTGCAAACGATCGCGGATGAATTGTTTATACTTCCCGCTACCGATCTGGAATTTATCGAGACGCAA
ATTCGCCATTTGCAGCCGGATTTTGTAATGATCGACTCGATTCAGACGATGTACCTGCCGCATATCTCGTCAGCGCCAGG
GAGCGTCAGTCAGGTTCGGGAGTGTACAGGGTATTTGCTGCGCATTTCAAAATCCCTGCAAATGGCGATCTTCATTGTCG
GCCATGTAACAAAAGAAGGAACGATTGCCGGTCCGCGATTGTTGGAACATATGGTTGATGCTGTGTTATATTTTGAAGGA
GAACGGCATCATTCCTATCGAATTTTGCGTGCGGTTAAAAATCGCTTTGGATCGACGAATGAGATGGGAATATTTGAAAT
GCGGGAATTGGGATTATCAGAAGTACGAAACCCGTCTGAGCTGTTTTTGGCAGAACGTCCACAAGGTGTGGCGGGTTCTG
CGGTGGTTGCCAGTATGGAAGGAACACGGCCATTATTGGTTGAAATTCAAGCGCTGTTGACACCTACTGCCTATGGGAAT
CCGAGGCGAATGGCGGCGGGTGTGGAAAACAGCCGGGTTGCTTTGTTGATGGCTGTGTTGGAAAAACGTGTCGGCCTGTT
TTTGCAAAATCAGGATGCCTACGTCAATGTTGCCGGTGGGGTCAGACTTGATGAACCTGCGGTAGATTTGGGCATTGCAG
TAAGCATCGGTTCGTCGTTTCGAAATCAAAGCATACATCCCTATGATGTTTTTATTGGAGAAATCGGGCTTACAGGTGAG
ATTCGTGCAGTATCCCGGATTGAACAACGTGTGAAGGAAGCCCTCAAACTCGGATTTCATAGATGTTTTCTGCCGATTGG
CAATATGCGGGGGTGGAAGCCGCCCGAAGGAATTCAGATCATTGCAGTCGAGACATTACAGGATGCGTTTCATTTTGCAT
TAGAAGGGTGA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(82-220)

Subunit ChlI of Mg-chelatase (ChlI)

(344-428)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(10-37)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

63.362

100

0.645
  radA Streptococcus mitis NCTC 12261

56.92

98.246

0.559
  radA Streptococcus mitis SK321

56.696

98.246

0.557
  radA Streptococcus pneumoniae Rx1

56.473

98.246

0.555
  radA Streptococcus pneumoniae D39

56.473

98.246

0.555
  radA Streptococcus pneumoniae R6

56.473

98.246

0.555
  radA Streptococcus pneumoniae TIGR4

56.473

98.246

0.555