Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   YBT1518_RS11255 Genome accession   NC_022873
Coordinates   2194807..2195094 (+) Length   95 a.a.
NCBI ID   WP_000648324.1    Uniprot ID   -
Organism   Bacillus thuringiensis YBT-1518     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 2189807..2200094
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  YBT1518_RS11235 (YBT1518_11100) - 2190980..2191177 (+) 198 WP_001048104.1 DUF4083 domain-containing protein -
  YBT1518_RS11240 (YBT1518_11105) - 2191208..2191669 (+) 462 WP_023521733.1 NUDIX hydrolase -
  YBT1518_RS11245 (YBT1518_11110) nadE 2191718..2192536 (-) 819 WP_023521734.1 ammonia-dependent NAD(+) synthetase -
  YBT1518_RS11250 (YBT1518_11115) - 2192810..2194690 (+) 1881 WP_001025996.1 FtsX-like permease family protein -
  YBT1518_RS11255 (YBT1518_11120) abrB 2194807..2195094 (+) 288 WP_000648324.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  YBT1518_RS11260 (YBT1518_11125) - 2195370..2196317 (+) 948 WP_023521735.1 serine protease -
  YBT1518_RS11265 (YBT1518_11130) - 2196356..2196664 (-) 309 WP_001259912.1 helix-turn-helix transcriptional regulator -
  YBT1518_RS11270 (YBT1518_11135) - 2196771..2197706 (+) 936 WP_023521736.1 aldo/keto reductase -
  YBT1518_RS11275 (YBT1518_11140) - 2197754..2198929 (+) 1176 WP_001082498.1 MFS transporter -
  YBT1518_RS11280 (YBT1518_11145) - 2199224..2199448 (-) 225 WP_000162602.1 hypothetical protein -
  YBT1518_RS11285 (YBT1518_11150) - 2199535..2199882 (-) 348 WP_000426321.1 DUF4257 domain-containing protein -

Sequence

Protein


Download         Length: 95 a.a.        Molecular weight: 10587.32 Da        Isoelectric Point: 4.8408

>NTDB_id=63620 YBT1518_RS11255 WP_000648324.1 2194807..2195094(+) (abrB) [Bacillus thuringiensis YBT-1518]
MKATGVIRKVDELGRIVIPKELRDVLGIQIKSPLEIFVEADKIILQKYQPYNACQITGDVSEQNISLANGNITVGIEGAE
YLVKEIEKFLNKSEV

Nucleotide


Download         Length: 288 bp        

>NTDB_id=63620 YBT1518_RS11255 WP_000648324.1 2194807..2195094(+) (abrB) [Bacillus thuringiensis YBT-1518]
ATGAAAGCAACAGGAGTTATTCGAAAAGTAGACGAATTAGGACGAATTGTTATCCCTAAAGAATTACGCGATGTATTGGG
AATACAAATCAAATCACCGCTTGAAATTTTTGTAGAAGCAGATAAAATCATTTTACAAAAATATCAACCTTACAATGCTT
GCCAAATCACAGGTGATGTTTCAGAACAGAACATATCATTAGCAAATGGAAATATTACTGTTGGGATAGAGGGAGCGGAA
TATTTAGTAAAAGAAATAGAAAAGTTTTTAAACAAGAGTGAGGTTTAG

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(53-88)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-49)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

55.556

94.737

0.526

Multiple sequence alignment