Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   YBT1518_RS09045 Genome accession   NC_022873
Coordinates   1760616..1761218 (-) Length   200 a.a.
NCBI ID   WP_000155599.1    Uniprot ID   A0A9W5VMY9
Organism   Bacillus thuringiensis YBT-1518     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1755616..1766218
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  YBT1518_RS09025 (YBT1518_08765) dnaD 1755935..1756642 (+) 708 WP_023521511.1 DNA replication protein DnaD -
  YBT1518_RS09030 (YBT1518_08770) nth 1756658..1757305 (+) 648 WP_000933035.1 endonuclease III -
  YBT1518_RS09035 (YBT1518_08775) - 1757309..1757827 (+) 519 WP_023521512.1 YpoC family protein -
  YBT1518_RS09040 (YBT1518_08780) - 1757853..1760549 (-) 2697 WP_023521513.1 PBP1A family penicillin-binding protein -
  YBT1518_RS09045 (YBT1518_08785) recU 1760616..1761218 (-) 603 WP_000155599.1 Holliday junction resolvase RecU Machinery gene
  YBT1518_RS09050 (YBT1518_08790) - 1761322..1762347 (+) 1026 WP_023521514.1 DUF2515 domain-containing protein -
  YBT1518_RS38890 - 1762500..1762679 (-) 180 WP_001987054.1 hypothetical protein -
  YBT1518_RS09055 (YBT1518_08800) - 1762765..1763007 (+) 243 WP_001252036.1 hypothetical protein -
  YBT1518_RS09060 (YBT1518_08805) - 1763023..1763367 (+) 345 WP_000786937.1 YppE family protein -
  YBT1518_RS09065 (YBT1518_08810) - 1763394..1763585 (-) 192 WP_000242652.1 YppF family protein -
  YBT1518_RS09070 (YBT1518_08815) - 1763763..1764320 (+) 558 WP_023521515.1 YppG family protein -
  YBT1518_RS09075 (YBT1518_08820) - 1764476..1764904 (+) 429 WP_000546290.1 CotD family spore coat protein -
  YBT1518_RS09080 (YBT1518_08825) - 1764961..1765515 (+) 555 WP_000862925.1 DUF1273 domain-containing protein -
  YBT1518_RS09085 (YBT1518_08830) gpsB 1765613..1765948 (+) 336 WP_000622431.1 cell division regulator GpsB -

Sequence

Protein


Download         Length: 200 a.a.        Molecular weight: 23325.54 Da        Isoelectric Point: 9.4336

>NTDB_id=63618 YBT1518_RS09045 WP_000155599.1 1760616..1761218(-) (recU) [Bacillus thuringiensis YBT-1518]
MTIRYPNGKRYNQASQPQKTPIKTHTYSNRGMSLEEELNETNQYYLTHNIACVHKKPTPLQIVKVDYPARSAAVVKEAYF
KQPSTTDYNGVYKGKYIDFEAKETKNKTSFPLQNFHLHQIEHMKQVVAHNGIAFVIIKFTLFDEFYLLDAKHIIAFWNRQ
NTGGRKSITKEEIEEHGSLLSCGYHPRIDYIRVLDTVYFS

Nucleotide


Download         Length: 603 bp        

>NTDB_id=63618 YBT1518_RS09045 WP_000155599.1 1760616..1761218(-) (recU) [Bacillus thuringiensis YBT-1518]
ATGACCATTCGTTACCCAAATGGAAAAAGGTATAATCAAGCTTCACAACCTCAAAAAACACCTATAAAAACACATACTTA
TAGTAATAGAGGTATGTCCCTTGAAGAGGAATTGAATGAAACAAATCAATATTACTTAACCCATAATATTGCATGTGTAC
ATAAAAAGCCTACACCTCTTCAAATTGTAAAAGTAGATTACCCCGCTCGAAGTGCTGCAGTGGTAAAAGAAGCGTATTTT
AAACAACCTTCTACGACAGATTACAACGGTGTATACAAAGGGAAATACATCGATTTTGAAGCAAAGGAAACAAAAAATAA
AACTAGTTTCCCACTTCAAAACTTCCACCTTCATCAAATAGAACATATGAAGCAAGTGGTTGCTCATAATGGAATTGCAT
TTGTCATTATTAAATTTACACTTTTTGATGAATTTTATTTATTAGATGCAAAACATATTATTGCATTTTGGAATCGTCAA
AATACAGGTGGACGCAAGTCGATTACGAAAGAAGAAATAGAAGAGCATGGATCCTTATTATCATGCGGTTATCACCCTCG
GATTGACTATATCCGTGTACTAGACACGGTTTATTTTTCGTGA

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(30-195)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

63.5

100

0.635

Multiple sequence alignment