Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   YBT1518_RS07700 Genome accession   NC_022873
Coordinates   1511404..1511727 (-) Length   107 a.a.
NCBI ID   WP_000578884.1    Uniprot ID   A0A9W5R9C5
Organism   Bacillus thuringiensis YBT-1518     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 1506404..1516727
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  YBT1518_RS07670 (YBT1518_07395) - 1506532..1506759 (+) 228 WP_000251856.1 hypothetical protein -
  YBT1518_RS07675 (YBT1518_07400) - 1506912..1508198 (+) 1287 WP_023521454.1 D-alanyl-D-alanine carboxypeptidase family protein -
  YBT1518_RS07680 (YBT1518_07405) sipW 1508396..1508965 (+) 570 WP_000767802.1 signal peptidase I SipW -
  YBT1518_RS07685 (YBT1518_07410) - 1509028..1509615 (+) 588 WP_000172852.1 CalY family protein -
  YBT1518_RS07690 (YBT1518_07415) - 1509735..1510355 (+) 621 Protein_1470 DUF4047 domain-containing protein -
  YBT1518_RS07695 (YBT1518_07420) calY 1510744..1511337 (+) 594 WP_000053714.1 biofilm matrix protein CalY -
  YBT1518_RS07700 (YBT1518_07425) sinR 1511404..1511727 (-) 324 WP_000578884.1 helix-turn-helix domain-containing protein Regulator
  YBT1518_RS07705 (YBT1518_07430) - 1511807..1511941 (-) 135 WP_000276219.1 anti-repressor SinI family protein -
  YBT1518_RS07710 (YBT1518_07435) inhA1 1512284..1514674 (+) 2391 WP_023521456.1 M6 family metalloprotease immune inhibitor InhA1 -
  YBT1518_RS07715 (YBT1518_07440) - 1514846..1516213 (+) 1368 WP_000029061.1 aldehyde dehydrogenase -

Sequence

Protein


Download         Length: 107 a.a.        Molecular weight: 12335.17 Da        Isoelectric Point: 9.6244

>NTDB_id=63616 YBT1518_RS07700 WP_000578884.1 1511404..1511727(-) (sinR) [Bacillus thuringiensis YBT-1518]
MIGERIKRLRLQKGISLTELAEKAGVAKSYISSIERNLQKNPSIQFLEKIAAVLQIPVDTLLHDETTKETNLDSEWTQLV
KDAMNSGVSKEQFREFLEFTKWKQNNK

Nucleotide


Download         Length: 324 bp        

>NTDB_id=63616 YBT1518_RS07700 WP_000578884.1 1511404..1511727(-) (sinR) [Bacillus thuringiensis YBT-1518]
ATGATTGGAGAACGTATAAAACGCCTTCGTTTACAAAAAGGGATTTCATTAACTGAACTTGCCGAAAAAGCTGGCGTTGC
TAAATCTTACATTAGTTCTATAGAACGAAATTTACAAAAAAACCCTTCCATTCAGTTTCTTGAAAAGATCGCAGCAGTTC
TACAAATTCCAGTTGATACTTTACTTCATGATGAAACAACAAAGGAAACTAACCTAGACTCCGAATGGACACAACTCGTT
AAAGATGCAATGAACTCTGGTGTCTCCAAAGAACAATTTCGTGAATTTCTTGAATTTACAAAGTGGAAGCAAAATAATAA
ATAG

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(6-60)

Anti-repressor SinI (SinI)

(72-99)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

66.972

100

0.682

Multiple sequence alignment