Detailed information    

insolico Bioinformatically predicted

Overview

Name   comK   Type   Regulator
Locus tag   LT232_RS07635 Genome accession   NZ_CP089287
Coordinates   1606148..1606726 (-) Length   192 a.a.
NCBI ID   WP_003155179.1    Uniprot ID   G1BIW7
Organism   Bacillus velezensis strain GSBZ09     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1601148..1611726
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LT232_RS07600 (LT232_07600) - 1601340..1602809 (+) 1470 WP_015239531.1 sodium:solute symporter -
  LT232_RS07605 (LT232_07605) - 1602851..1603168 (+) 318 WP_003155166.1 YbjQ family protein -
  LT232_RS07610 (LT232_07610) - 1603200..1603469 (-) 270 WP_003155168.1 excalibur calcium-binding domain-containing protein -
  LT232_RS07615 (LT232_07615) - 1603665..1604375 (+) 711 WP_100001352.1 YrpD family protein -
  LT232_RS07620 (LT232_07620) - 1604604..1605113 (-) 510 WP_012117237.1 MepB family protein -
  LT232_RS07625 (LT232_07625) - 1605236..1605607 (-) 372 WP_221664044.1 iron chaperone -
  LT232_RS07630 (LT232_07630) - 1605634..1606002 (-) 369 WP_221664046.1 iron chaperone -
  LT232_RS07635 (LT232_07635) comK 1606148..1606726 (-) 579 WP_003155179.1 competence protein ComK Regulator
  LT232_RS07640 (LT232_07640) - 1607042..1607275 (+) 234 WP_012117233.1 IDEAL domain-containing protein -
  LT232_RS07645 (LT232_07645) - 1607306..1608163 (-) 858 WP_221664047.1 SDR family oxidoreductase -
  LT232_RS07650 (LT232_07650) - 1608288..1609811 (+) 1524 WP_191974063.1 FAD-dependent oxidoreductase -
  LT232_RS20745 - 1610043..1610417 (+) 375 Protein_1531 protoglobin domain-containing protein -
  LT232_RS20750 - 1610427..1611224 (+) 798 WP_371265894.1 methyl-accepting chemotaxis protein -

Sequence

Protein


Download         Length: 192 a.a.        Molecular weight: 22315.58 Da        Isoelectric Point: 8.1419

>NTDB_id=636157 LT232_RS07635 WP_003155179.1 1606148..1606726(-) (comK) [Bacillus velezensis strain GSBZ09]
MCQKTHAPLESYEVNRSTIAVLPEEIDGKMGSKVIEKDCILYVSMKPIHIIDRSCRYFGSSYAGRKAGTYEAIKISHKPP
IMVDPSNHIFLFPTLSSARPQCGWISHVHVKDFQPTAFDDTAVTFSNGKTMELEVSYHSFENQVYRTAYLRTTFQDRMGS
HIPKRQEFMLYPKEERTRMIYDFILRELGERY

Nucleotide


Download         Length: 579 bp        

>NTDB_id=636157 LT232_RS07635 WP_003155179.1 1606148..1606726(-) (comK) [Bacillus velezensis strain GSBZ09]
ATGTGCCAGAAAACACACGCACCCTTAGAAAGCTATGAAGTAAATCGTTCAACCATCGCTGTTTTGCCTGAGGAAATAGA
CGGTAAAATGGGGTCGAAGGTCATTGAAAAAGACTGCATTCTGTATGTCAGCATGAAGCCGATTCACATCATCGACAGAA
GCTGCCGCTACTTTGGCTCCAGCTATGCCGGGAGAAAAGCGGGAACATATGAAGCGATTAAAATTTCTCACAAGCCGCCG
ATTATGGTGGACCCTTCAAATCACATCTTTTTATTCCCTACACTTTCTTCTGCAAGGCCTCAATGCGGCTGGATATCTCA
TGTGCACGTTAAAGATTTTCAACCGACGGCATTTGATGACACAGCGGTCACGTTCTCAAACGGCAAAACGATGGAACTGG
AAGTATCCTATCATTCTTTTGAAAATCAGGTTTACAGAACCGCCTATCTCAGAACCACTTTTCAGGACAGGATGGGCAGT
CATATCCCGAAGCGGCAGGAATTCATGCTGTATCCGAAAGAAGAGCGGACAAGAATGATCTACGACTTTATTTTGCGGGA
GCTGGGAGAGAGATATTAG

Domains

Predicted by InterproScan.

ComK protein (ComK)

(10-158)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G1BIW7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comK Bacillus subtilis subsp. subtilis str. 168

82.292

100

0.823