Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   YBT1518_RS07285 Genome accession   NC_022873
Coordinates   1434418..1436244 (+) Length   608 a.a.
NCBI ID   WP_000003352.1    Uniprot ID   A0AAN4KRW4
Organism   Bacillus thuringiensis YBT-1518     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 1429418..1441244
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  YBT1518_RS07265 (YBT1518_06995) - 1429722..1430396 (-) 675 WP_000362612.1 TerC family protein -
  YBT1518_RS07270 (YBT1518_07000) mecA 1430742..1431425 (+) 684 WP_000350715.1 adaptor protein MecA Regulator
  YBT1518_RS07275 (YBT1518_07005) - 1431498..1433042 (+) 1545 WP_000799191.1 cardiolipin synthase -
  YBT1518_RS07280 (YBT1518_07010) - 1433123..1434367 (+) 1245 WP_000612280.1 competence protein CoiA -
  YBT1518_RS07285 (YBT1518_07015) pepF 1434418..1436244 (+) 1827 WP_000003352.1 oligoendopeptidase F Regulator
  YBT1518_RS37455 - 1436375..1436548 (-) 174 WP_000750354.1 hypothetical protein -
  YBT1518_RS07290 (YBT1518_07020) - 1436778..1437671 (-) 894 WP_000360645.1 ClpXP adapter SpxH family protein -
  YBT1518_RS07295 (YBT1518_07025) - 1437671..1438069 (-) 399 WP_000043386.1 hypothetical protein -
  YBT1518_RS07300 (YBT1518_07030) - 1438238..1438816 (-) 579 WP_000191122.1 CYTH domain-containing protein -
  YBT1518_RS07305 (YBT1518_07035) - 1438961..1439332 (+) 372 WP_001180005.1 hypothetical protein -
  YBT1518_RS07310 (YBT1518_07040) - 1439363..1440001 (+) 639 WP_001081482.1 GTP pyrophosphokinase family protein -
  YBT1518_RS07315 (YBT1518_07045) - 1440020..1440817 (+) 798 WP_000673190.1 NAD kinase -

Sequence

Protein


Download         Length: 608 a.a.        Molecular weight: 70217.56 Da        Isoelectric Point: 4.6201

>NTDB_id=63615 YBT1518_RS07285 WP_000003352.1 1434418..1436244(+) (pepF) [Bacillus thuringiensis YBT-1518]
MSEQNKAKALPDRNEIEEASTWRLEDIFQTDAEWEKEFQAIKELLPKLTEFKGKLGDSADNLLEALQYEDEISMRLGKLY
TYAHMRYDQDTTNSVYQALNDRATNLYSQVSSSTAYIVPEILSISEDTMQTFLKENRDLSVYEHALEEITRQRPHVLSEA
EEALLAEASEVMSSSSNTFGMLNNADLKFPSIKGEDGEEIEITHGRYIQFLESDNPRVREDAFKAVYETYGKFKNTFAST
LSGAVKRNNFNARVRKYDSARQAALSNNNIPEAVYDQLVETVNDNLHLLHRYIDIRKRALGLDELHMYDLYTPLVPEVKM
NVKYEEAQDLLLKSLNVLGDEYVDILKEAYENRWVDVYENKGKRSGAYSSGAYGTNPYILMNWHDNVNNLFTLAHEFGHS
VHSYYTRKTQPHVYGDYSIFVAEVASTCNEALLNDYLLKTTEDKKERLYLLNHYLEGFRGTVFRQTMFAEFEHIIHKKVQ
EGHAVTPDMLTEIYYDLNKKYFGDALVIDEEIGLEWSRIPHFYYNYYVYQYATGFSAATALSKQILEEGQPAVERYINEF
LKAGSSDYPIEVLKKAGVDMASPEPVKEALQVFEEKLNELEALLFEEK

Nucleotide


Download         Length: 1827 bp        

>NTDB_id=63615 YBT1518_RS07285 WP_000003352.1 1434418..1436244(+) (pepF) [Bacillus thuringiensis YBT-1518]
ATGTCTGAACAAAACAAAGCGAAAGCATTACCAGATCGCAACGAGATTGAAGAAGCAAGTACGTGGCGATTAGAAGATAT
TTTCCAAACGGATGCAGAATGGGAAAAAGAATTCCAGGCTATTAAAGAGCTATTACCGAAGTTAACTGAATTTAAAGGGA
AACTTGGTGACTCTGCGGACAATTTACTTGAGGCATTGCAATATGAAGATGAAATTTCAATGCGATTAGGTAAGCTATAT
ACATATGCGCATATGCGTTACGATCAAGATACAACAAACTCTGTATATCAAGCATTAAATGATCGCGCAACAAATTTATA
TTCACAAGTATCTAGTAGCACAGCGTATATTGTGCCTGAAATTTTATCGATTTCAGAAGATACAATGCAAACATTCTTGA
AGGAAAATAGAGATTTAAGTGTATATGAACATGCATTAGAAGAAATTACACGTCAACGCCCGCACGTATTATCAGAAGCT
GAGGAGGCTTTATTAGCGGAAGCATCTGAAGTAATGAGTTCATCAAGCAATACATTCGGTATGTTGAATAACGCGGATTT
AAAATTCCCATCTATTAAAGGTGAAGACGGAGAAGAAATAGAAATTACACATGGCCGTTACATTCAGTTTTTAGAAAGTG
ATAATCCTCGTGTTCGCGAAGATGCATTTAAAGCTGTATATGAAACGTATGGGAAATTTAAAAATACATTCGCAAGTACG
TTAAGTGGAGCAGTAAAACGTAATAATTTCAATGCGCGTGTTCGTAAATATGATTCTGCTCGCCAAGCTGCACTGAGCAA
TAATAATATTCCGGAAGCAGTATACGATCAACTCGTTGAAACGGTAAATGACAACTTACATTTATTACACCGTTACATCG
ATATTCGTAAGCGTGCATTAGGACTTGATGAGCTTCATATGTATGATTTATATACACCACTTGTACCAGAAGTGAAAATG
AATGTGAAATACGAAGAAGCACAAGACCTTTTATTAAAATCTTTAAACGTACTTGGTGATGAATATGTTGATATTTTGAA
AGAGGCATATGAAAATCGCTGGGTAGATGTGTATGAGAATAAAGGAAAACGAAGCGGGGCATACTCATCTGGTGCATATG
GAACAAATCCGTATATTTTAATGAACTGGCATGATAATGTAAATAACTTATTTACACTTGCTCATGAGTTTGGTCATTCG
GTGCATAGTTACTATACAAGAAAAACACAACCGCACGTATATGGTGATTATTCCATCTTTGTAGCAGAAGTGGCATCTAC
TTGTAATGAAGCGCTTCTAAATGATTATTTATTAAAAACGACAGAAGATAAGAAAGAGCGTCTATATTTATTAAATCATT
ATTTAGAAGGGTTCCGTGGTACTGTATTCCGTCAAACGATGTTTGCAGAGTTTGAACATATTATTCATAAGAAAGTACAA
GAAGGACATGCTGTTACGCCAGATATGCTAACGGAAATCTACTATGATTTAAATAAGAAATATTTCGGTGACGCTTTAGT
AATCGACGAAGAGATTGGTTTAGAATGGTCTCGTATTCCACACTTCTACTACAACTATTACGTATATCAATACGCAACAG
GATTTAGTGCAGCGACAGCTCTATCTAAACAGATTTTAGAAGAAGGACAACCAGCAGTAGAACGTTATATTAACGAGTTC
TTAAAAGCAGGAAGCTCTGATTATCCAATTGAAGTGCTGAAAAAAGCAGGAGTAGATATGGCATCTCCTGAACCAGTAAA
AGAGGCGCTACAAGTATTTGAAGAGAAATTAAATGAATTAGAAGCATTATTATTTGAAGAAAAGTAA

Domains

Predicted by InterproScan.

Oligopeptidase F (Peptidase_M3_N)

(120-189)

Peptidase family M3 (Peptidase_M3)

(211-591)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

49.578

97.533

0.484

Multiple sequence alignment