Detailed information    

insolico Bioinformatically predicted

Overview

Name   kre   Type   Regulator
Locus tag   LT232_RS05835 Genome accession   NZ_CP089287
Coordinates   1276995..1277459 (+) Length   154 a.a.
NCBI ID   WP_003154622.1    Uniprot ID   A0A9Q3QIJ3
Organism   Bacillus velezensis strain GSBZ09     
Function   regulation of regulators (predicted from homology)   
Competence regulation

Genomic Context

Location: 1271995..1282459
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LT232_RS05810 (LT232_05810) - 1272503..1273024 (-) 522 WP_100001409.1 hypothetical protein -
  LT232_RS05815 (LT232_05815) fadH 1273163..1273927 (-) 765 WP_038463789.1 2,4-dienoyl-CoA reductase -
  LT232_RS05820 (LT232_05820) - 1274072..1274935 (+) 864 WP_038463786.1 metallophosphoesterase -
  LT232_RS05825 (LT232_05825) - 1275010..1275504 (+) 495 WP_088462390.1 L,D-transpeptidase family protein -
  LT232_RS05830 (LT232_05830) - 1275580..1276872 (+) 1293 WP_015239757.1 MFS transporter -
  LT232_RS05835 (LT232_05835) kre 1276995..1277459 (+) 465 WP_003154622.1 YkyB family protein Regulator
  LT232_RS05840 (LT232_05840) cheV 1277502..1278413 (-) 912 WP_007409609.1 chemotaxis protein CheV -
  LT232_RS05845 (LT232_05845) - 1278602..1278763 (+) 162 WP_007409608.1 hypothetical protein -
  LT232_RS05850 (LT232_05850) - 1278964..1280177 (+) 1214 Protein_1167 aminotransferase A -
  LT232_RS05855 (LT232_05855) - 1280158..1281978 (-) 1821 WP_015417363.1 PAS domain-containing protein -

Sequence

Protein


Download         Length: 154 a.a.        Molecular weight: 17784.55 Da        Isoelectric Point: 10.4864

>NTDB_id=636146 LT232_RS05835 WP_003154622.1 1276995..1277459(+) (kre) [Bacillus velezensis strain GSBZ09]
MDDHAYSKELQPTIENLSKAVYTVNRHAKTAPNPKYLYLLKKRALQKLVKEGKGKKIGLHFSNNPRFSQQQSDVLISIGD
YYFHMPPTKEDFQHLPHLGTLNQSYRNPKAQMSLTKAKNVLQKYVGLKEKPLAANRQQPAYHKPVFKKLGESYF

Nucleotide


Download         Length: 465 bp        

>NTDB_id=636146 LT232_RS05835 WP_003154622.1 1276995..1277459(+) (kre) [Bacillus velezensis strain GSBZ09]
ATGGACGACCACGCTTATTCGAAAGAGCTGCAGCCAACCATCGAGAATCTTTCAAAAGCTGTTTATACTGTGAACCGCCA
TGCAAAAACCGCCCCCAACCCTAAATACCTTTATCTGCTGAAAAAACGGGCATTACAAAAGCTTGTGAAAGAAGGCAAAG
GGAAAAAAATAGGGCTTCACTTTTCAAATAATCCCAGGTTTAGCCAACAGCAGTCAGACGTACTTATCTCTATCGGAGAC
TACTATTTTCACATGCCTCCAACAAAAGAAGACTTCCAGCATCTTCCGCATTTAGGTACGTTAAATCAATCGTACCGCAA
TCCTAAAGCACAAATGTCTTTGACAAAAGCGAAAAACGTATTGCAAAAATATGTGGGCTTAAAGGAAAAACCGCTTGCCG
CCAACAGGCAGCAGCCCGCTTATCATAAACCCGTATTTAAAAAACTTGGTGAGAGTTATTTTTAA

Domains

Predicted by InterproScan.

YkyB-like protein (YkyB)

(13-127)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  kre Bacillus subtilis subsp. subtilis str. 168

92.857

100

0.929