Detailed information    

insolico Bioinformatically predicted

Overview

Name   rok   Type   Regulator
Locus tag   LT232_RS05735 Genome accession   NZ_CP089287
Coordinates   1260999..1261595 (-) Length   198 a.a.
NCBI ID   WP_003154591.1    Uniprot ID   -
Organism   Bacillus velezensis strain GSBZ09     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1255999..1266595
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LT232_RS05710 (LT232_05710) mobB 1256375..1256896 (-) 522 WP_039063003.1 molybdopterin-guanine dinucleotide biosynthesis protein B -
  LT232_RS05715 (LT232_05715) glp 1256857..1258149 (-) 1293 WP_039063001.1 gephyrin-like molybdotransferase Glp -
  LT232_RS05720 (LT232_05720) - 1258167..1259186 (-) 1020 WP_039062999.1 molybdopterin-synthase adenylyltransferase MoeB -
  LT232_RS05725 (LT232_05725) - 1259238..1259840 (-) 603 WP_020955749.1 molybdenum cofactor guanylyltransferase -
  LT232_RS05730 (LT232_05730) - 1259986..1260978 (+) 993 WP_234631203.1 sporulation protein -
  LT232_RS05735 (LT232_05735) rok 1260999..1261595 (-) 597 WP_003154591.1 transcriptional regulator Rok Regulator
  LT232_RS05740 (LT232_05740) - 1262046..1262504 (-) 459 WP_039062998.1 TlpA disulfide reductase family protein -
  LT232_RS05745 (LT232_05745) - 1262793..1263599 (+) 807 WP_038463800.1 mechanosensitive ion channel family protein -
  LT232_RS05750 (LT232_05750) - 1263633..1263878 (-) 246 WP_003154596.1 YkuS family protein -
  LT232_RS05755 (LT232_05755) - 1263939..1265063 (-) 1125 WP_032868142.1 N-acetyldiaminopimelate deacetylase -
  LT232_RS05760 (LT232_05760) dapD 1265134..1265844 (-) 711 WP_007409623.1 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase -
  LT232_RS05765 (LT232_05765) - 1265926..1266381 (-) 456 WP_007409622.1 flavodoxin -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 22525.57 Da        Isoelectric Point: 9.6909

>NTDB_id=636145 LT232_RS05735 WP_003154591.1 1260999..1261595(-) (rok) [Bacillus velezensis strain GSBZ09]
MFNEREALRLRLEQLNEAEVKVIREYQIERDKIYAKLRELDNTGSLSDTKKEFRPEKKSDSLPVLAELAAQEMRSYQKPQ
TQPQSSQPQMQSITSLPAGIPDGSTRRRRGTARPGSKAAKLREAAIKTLKRHNAAIKSSELQKEIEKESGLEIPNMTTFM
QSLIKMYPEVKKPYRGQYILEGEISQETAETANDTAAE

Nucleotide


Download         Length: 597 bp        

>NTDB_id=636145 LT232_RS05735 WP_003154591.1 1260999..1261595(-) (rok) [Bacillus velezensis strain GSBZ09]
ATGTTTAATGAAAGAGAAGCGCTGCGCTTACGTTTAGAACAATTGAACGAAGCAGAGGTAAAAGTCATTCGTGAATATCA
AATAGAACGTGATAAAATATATGCAAAACTGAGAGAATTAGACAATACAGGCAGCCTGTCCGATACAAAAAAAGAGTTTC
GTCCGGAGAAAAAAAGTGACTCTCTCCCGGTGCTTGCAGAGCTTGCAGCACAGGAAATGAGAAGCTATCAAAAGCCGCAG
ACACAGCCTCAATCCTCCCAGCCGCAGATGCAGTCTATTACGTCTCTTCCCGCCGGCATTCCAGACGGTTCTACAAGAAG
AAGAAGAGGGACGGCGAGACCGGGATCAAAAGCGGCAAAACTGCGCGAAGCAGCGATTAAAACATTGAAACGCCACAATG
CAGCGATTAAAAGTTCCGAACTGCAAAAGGAAATTGAAAAGGAAAGCGGCCTTGAAATTCCTAATATGACAACATTTATG
CAAAGCTTAATTAAAATGTATCCGGAAGTGAAAAAACCATACCGCGGCCAATATATTCTTGAGGGAGAAATTTCTCAGGA
AACAGCAGAAACGGCAAATGATACGGCTGCTGAATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rok Bacillus subtilis subsp. subtilis str. 168

86.082

97.98

0.843