Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   LT232_RS05625 Genome accession   NZ_CP089287
Coordinates   1240811..1241095 (-) Length   94 a.a.
NCBI ID   WP_003154557.1    Uniprot ID   -
Organism   Bacillus velezensis strain GSBZ09     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 1235811..1246095
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LT232_RS05605 (LT232_05605) ade 1235918..1237651 (-) 1734 WP_038463817.1 adenine deaminase -
  LT232_RS05610 (LT232_05610) ktrC 1237799..1238464 (-) 666 WP_003154554.1 Ktr system potassium transporter KtrC -
  LT232_RS05615 (LT232_05615) - 1238505..1239332 (-) 828 WP_038463814.1 gamma-glutamylcyclotransferase -
  LT232_RS05620 (LT232_05620) - 1239334..1240638 (-) 1305 WP_234631202.1 ATP-binding protein -
  LT232_RS05625 (LT232_05625) abrB 1240811..1241095 (-) 285 WP_003154557.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  LT232_RS05630 (LT232_05630) mreBH 1241366..1242373 (+) 1008 WP_003154558.1 cell shape-determining protein MreBH -
  LT232_RS05635 (LT232_05635) - 1242445..1242579 (+) 135 WP_012117458.1 protein YkpC -
  LT232_RS05640 (LT232_05640) - 1242680..1243912 (+) 1233 WP_007409644.1 aminopeptidase -
  LT232_RS05645 (LT232_05645) - 1243944..1244852 (-) 909 WP_038463811.1 ketopantoate reductase family protein -

Sequence

Protein


Download         Length: 94 a.a.        Molecular weight: 10584.45 Da        Isoelectric Point: 5.2271

>NTDB_id=636144 LT232_RS05625 WP_003154557.1 1240811..1241095(-) (abrB) [Bacillus velezensis strain GSBZ09]
MKSIGVVRKVDELGRIVMPIELRRALDIAIKDSIEFFVDGDKIVLKKYKPHGICLMTGEITPENQEYGNGKIILSPEGAK
MLLEEIEEALKDRS

Nucleotide


Download         Length: 285 bp        

>NTDB_id=636144 LT232_RS05625 WP_003154557.1 1240811..1241095(-) (abrB) [Bacillus velezensis strain GSBZ09]
ATGAAATCAATTGGTGTAGTAAGAAAAGTAGACGAACTCGGGCGTATTGTCATGCCGATTGAATTGAGAAGAGCATTGGA
TATCGCTATTAAAGATAGTATTGAATTTTTCGTTGACGGAGACAAAATTGTCTTGAAAAAATACAAGCCGCACGGCATTT
GCTTAATGACGGGGGAAATTACTCCCGAAAATCAGGAGTACGGCAACGGCAAAATTATTTTAAGTCCTGAAGGAGCGAAA
ATGCTGCTTGAGGAAATCGAGGAAGCGTTAAAAGATAGATCATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(54-88)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-51)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

55.435

97.872

0.543