Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   LT232_RS04220 Genome accession   NZ_CP089287
Coordinates   850240..850674 (-) Length   144 a.a.
NCBI ID   WP_015417516.1    Uniprot ID   -
Organism   Bacillus velezensis strain GSBZ09     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 845240..855674
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LT232_RS04195 (LT232_04195) - 845807..846040 (-) 234 WP_015239897.1 hypothetical protein -
  LT232_RS04200 (LT232_04200) - 846219..847547 (+) 1329 WP_039063127.1 S8 family peptidase -
  LT232_RS04205 (LT232_04205) - 847740..848102 (+) 363 WP_007410383.1 hypothetical protein -
  LT232_RS04210 (LT232_04210) - 848218..849369 (+) 1152 Protein_839 IS3 family transposase -
  LT232_RS04215 (LT232_04215) - 849425..850180 (-) 756 WP_003154084.1 YoaK family protein -
  LT232_RS04220 (LT232_04220) nucA/comI 850240..850674 (-) 435 WP_015417516.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  LT232_RS04225 (LT232_04225) - 850963..852174 (+) 1212 WP_094031922.1 cytochrome P450 family protein -

Sequence

Protein


Download         Length: 144 a.a.        Molecular weight: 15514.44 Da        Isoelectric Point: 7.2418

>NTDB_id=636139 LT232_RS04220 WP_015417516.1 850240..850674(-) (nucA/comI) [Bacillus velezensis strain GSBZ09]
MNAFMKWAASLLLVISLQFGLTGAGIHSDSAARAASRYDQVLYFPLSKYPETGNHIKDAISAGHSEICTIDRGGAENRRK
ESLKGIPTKPGFDRDEWPMAVCTEGGAGADVRYVTPSDNRGAGSWVGNQMSGYSDGTRVLFIVQ

Nucleotide


Download         Length: 435 bp        

>NTDB_id=636139 LT232_RS04220 WP_015417516.1 850240..850674(-) (nucA/comI) [Bacillus velezensis strain GSBZ09]
ATGAATGCGTTTATGAAATGGGCGGCAAGTCTGCTTTTGGTGATCTCTCTTCAGTTCGGCCTTACGGGCGCCGGTATCCA
TTCGGACAGTGCTGCTCGTGCCGCATCCCGATACGATCAGGTGCTGTATTTCCCGCTGTCAAAATATCCGGAGACGGGAA
ATCATATAAAAGACGCCATTTCGGCAGGTCATTCTGAGATTTGTACAATTGATCGGGGCGGAGCAGAGAATAGAAGGAAA
GAATCATTGAAAGGAATTCCGACAAAGCCCGGGTTTGACCGTGATGAATGGCCCATGGCAGTCTGCACAGAAGGCGGGGC
GGGGGCTGATGTCAGATATGTAACCCCGTCGGATAACCGCGGGGCCGGTTCATGGGTTGGAAATCAAATGAGCGGATATT
CCGACGGCACGAGAGTATTATTTATCGTTCAGTAG

Domains

Predicted by InterProScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(49-138)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

57.258

86.111

0.493