Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   LT232_RS02195 Genome accession   NZ_CP089287
Coordinates   433454..434062 (-) Length   202 a.a.
NCBI ID   WP_094031925.1    Uniprot ID   -
Organism   Bacillus velezensis strain GSBZ09     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 428454..439062
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LT232_RS02175 (LT232_02175) dnaD 428690..429388 (+) 699 WP_003153516.1 DNA replication protein DnaD -
  LT232_RS02180 (LT232_02180) nth 429407..430066 (+) 660 WP_076425357.1 endonuclease III -
  LT232_RS02185 (LT232_02185) - 430063..430554 (+) 492 WP_094031797.1 YpoC family protein -
  LT232_RS02190 (LT232_02190) - 430632..433415 (-) 2784 WP_094031796.1 PBP1A family penicillin-binding protein -
  LT232_RS02195 (LT232_02195) recU 433454..434062 (-) 609 WP_094031925.1 Holliday junction resolvase RecU Machinery gene
  LT232_RS02200 (LT232_02200) - 434104..435066 (+) 963 WP_094031795.1 DUF2515 domain-containing protein -
  LT232_RS02205 (LT232_02205) sspM 435110..435214 (-) 105 WP_003153525.1 acid-soluble spore protein SspM -
  LT232_RS02210 (LT232_02210) - 435420..435665 (+) 246 WP_015240083.1 DUF5446 family protein -
  LT232_RS02215 (LT232_02215) - 435711..436079 (+) 369 WP_007409492.1 YppE family protein -
  LT232_RS02220 (LT232_02220) - 436118..436300 (-) 183 WP_003153532.1 YppF family protein -
  LT232_RS02225 (LT232_02225) - 436487..436921 (+) 435 WP_007409493.1 YppG family protein -
  LT232_RS02230 (LT232_02230) - 436951..437364 (-) 414 WP_017418017.1 Hsp20/alpha crystallin family protein -
  LT232_RS02235 (LT232_02235) - 437503..438009 (+) 507 WP_012117833.1 PTS glucose transporter subunit IIA -

Sequence

Protein


Download         Length: 202 a.a.        Molecular weight: 23694.77 Da        Isoelectric Point: 9.5849

>NTDB_id=636138 LT232_RS02195 WP_094031925.1 433454..434062(-) (recU) [Bacillus velezensis strain GSBZ09]
MIRYPNGKTFQPNKTVSSQNSQKRSHSYSNRGMTLEDDLNETNKYYLANQIAVIHKKPTPVQIVNVHYPKRSAAVIKEAY
FKQSSTTDYNGIYKGRYIDFEAKETKNKTAFPLQNFHDHQIEHMKQVVRQDGICFVIISAFGKVYFLEADKLFVFWERKE
NNGRKSIRRDELEDASFPISLGYSPRIDYISIIEQLYFSQEQ

Nucleotide


Download         Length: 609 bp        

>NTDB_id=636138 LT232_RS02195 WP_094031925.1 433454..434062(-) (recU) [Bacillus velezensis strain GSBZ09]
GTGATTCGGTACCCGAATGGAAAAACTTTTCAGCCGAACAAAACGGTTTCATCCCAAAACAGCCAGAAACGGTCTCATTC
ATACAGTAATCGCGGCATGACCCTCGAAGACGACCTGAATGAAACGAATAAGTATTATCTGGCTAACCAAATTGCTGTCA
TTCACAAAAAGCCGACACCCGTCCAGATTGTAAACGTCCACTATCCGAAAAGAAGCGCCGCAGTCATTAAGGAAGCTTAT
TTTAAACAGTCTTCCACAACTGACTACAACGGCATTTATAAAGGGCGCTACATTGATTTTGAGGCAAAAGAAACAAAAAA
CAAAACGGCATTTCCCCTGCAGAATTTTCATGATCATCAGATTGAGCATATGAAGCAGGTGGTCAGACAAGACGGCATTT
GTTTTGTTATTATATCCGCTTTCGGAAAGGTTTATTTCCTCGAAGCCGACAAGCTGTTTGTCTTTTGGGAGAGAAAGGAG
AACAATGGCAGAAAATCGATTCGCAGAGACGAATTAGAAGATGCTTCCTTTCCGATTTCCCTTGGATACTCACCGAGAAT
TGATTATATTAGTATTATTGAACAGCTTTATTTTTCGCAGGAACAGTAG

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(31-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

89.95

98.515

0.886