Detailed information NTG0636115

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: PALA16_RS06850
• Genome accession: NZ_CP106744
• Coordinates: 1468248..1469252 (+)
• Length: 334 a.a.
• NCBI ID: WP_003113871.1
• Uniprot ID: A0A0H2ZEU1
• Organism: Pseudomonas aeruginosa strain PALA16
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1463248..1474252

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
PALA16_RS06820 (PALA16_01360)	fghA	1463340..1464191 (+)	852	WP_003113869.1	S-formylglutathione hydrolase	-
PALA16_RS06825 (PALA16_01361)	ispF	1464262..1464735 (+)	474	WP_003098560.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
PALA16_RS06830 (PALA16_01362)	truD	1464732..1465799 (+)	1068	WP_016852567.1	tRNA pseudouridine(13) synthase TruD	-
PALA16_RS06835 (PALA16_01363)	surE	1465787..1466536 (+)	750	WP_003092341.1	5'/3'-nucleotidase SurE	-
PALA16_RS06840 (PALA16_01364)	-	1466569..1467204 (+)	636	WP_003098558.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
PALA16_RS06845 (PALA16_01365)	-	1467250..1468143 (+)	894	WP_016852568.1	peptidoglycan DD-metalloendopeptidase family protein	-
PALA16_RS06850 (PALA16_01366)	rpoS	1468248..1469252 (+)	1005	WP_003113871.1	RNA polymerase sigma factor RpoS	Regulator
PALA16_RS06855 (PALA16_01367)	fdxA	1469679..1470002 (-)	324	WP_003119354.1	ferredoxin FdxA	-
PALA16_RS06860 (PALA16_01368)	mutS	1470069..1472636 (-)	2568	WP_003113873.1	DNA mismatch repair protein MutS	-
PALA16_RS06865 (PALA16_01369)	-	1472762..1473769 (-)	1008	WP_003098486.1	TolB family protein	-

Sequence

Protein

• Length: 334 a.a.
• Molecular weight: 38235.38 Da
• Isoelectric Point: 5.0478

>NTDB_id=636115 PALA16_RS06850 WP_003113871.1 1468248..1469252(+) (rpoS) [Pseudomonas aeruginosa strain PALA16]
MALKKEGPEFDHDDEVLLLEPGIMLDESSADEQPSPRATPKATTSFSSKQHKHIDYTRALDATQLYLNEIGFSPLLTPEE
EVHFARLAQKGDPAGRKRMIESNLRLVVKIARRYVNRGLSLLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIE
RAIMNQTRTIRLPIHVVKELNVYLRAARELTHKLDHEPSPEEIANLLEKPVAEVKRMLGLNERVTSVDVSLGPDSDKTLL
DTLTDDRPTDPCELLQDDDLSESIDQWLTELTDKQREVVIRRFGLRGHESSTLEEVGQEIGLTRERVRQIQVEALKRLRE
ILEKNGLSSDALFQ

Nucleotide

• Length: 1005 bp

>NTDB_id=636115 PALA16_RS06850 WP_003113871.1 1468248..1469252(+) (rpoS) [Pseudomonas aeruginosa strain PALA16]
ATGGCACTCAAAAAAGAAGGGCCGGAGTTTGACCACGATGATGAAGTGCTCCTCCTGGAGCCCGGCATCATGCTGGACGA
GTCGTCTGCCGACGAGCAGCCTTCTCCCCGGGCAACTCCAAAAGCCACCACTTCCTTCTCTTCCAAACAACACAAGCACA
TCGACTACACGCGCGCGTTGGACGCAACGCAGCTGTATCTCAACGAAATCGGTTTCTCGCCCCTGTTGACGCCCGAAGAG
GAAGTCCACTTCGCTCGTCTGGCGCAGAAGGGCGATCCCGCTGGTCGGAAGCGGATGATCGAGAGCAACCTGCGGTTGGT
GGTGAAGATCGCCCGGCGCTATGTCAATCGCGGACTGTCCCTGCTCGACCTGATCGAGGAAGGCAACCTAGGCCTGATCC
GCGCCGTGGAGAAGTTCGATCCGGAGCGCGGATTCCGGTTCTCGACCTACGCCACCTGGTGGATCCGCCAGACCATCGAA
CGGGCCATCATGAACCAGACCCGGACCATTCGCTTGCCGATCCATGTGGTCAAGGAGCTCAACGTCTACCTGCGTGCGGC
GCGGGAACTGACCCACAAGCTCGACCACGAACCTTCCCCCGAAGAAATCGCCAACCTGCTGGAGAAGCCGGTCGCCGAGG
TCAAGCGCATGCTCGGCCTGAACGAACGGGTGACTTCGGTGGACGTCTCTCTTGGTCCGGACTCGGACAAGACCCTGCTG
GATACGCTCACCGACGATCGCCCCACCGACCCGTGCGAGCTGCTGCAGGATGACGATCTCAGCGAAAGCATCGACCAGTG
GCTGACGGAACTCACCGACAAGCAGCGTGAGGTGGTGATTCGCCGCTTCGGCTTGCGCGGGCACGAAAGCAGCACGCTGG
AAGAGGTCGGCCAGGAAATCGGCCTGACCCGCGAGCGGGTTCGTCAGATCCAGGTCGAGGCGCTGAAGCGCCTGCGGGAG
ATCCTGGAGAAGAATGGCCTGTCGAGTGACGCGCTGTTCCAGTGA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (179-253)

• Sigma-70 region 2 (Sigma70_r2) (99-168)

• Sigma-70, region 4 (Sigma70_r4) (267-320)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (61-94)

3D structure

• AlphaFold DB: A0A0H2ZEU1

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	66.463	98.204	0.653