Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprB   Type   Machinery gene
Locus tag   LUA78_RS06485 Genome accession   NZ_CP089283
Coordinates   1373625..1374029 (+) Length   134 a.a.
NCBI ID   WP_000599187.1    Uniprot ID   Q9ZMA5
Organism   Helicobacter pylori strain J99 derivative isolate D1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1368625..1379029
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LUA78_RS06450 (LUA78_06450) - 1368797..1369735 (-) 939 WP_000833880.1 tetraacyldisaccharide 4'-kinase -
  LUA78_RS06455 (LUA78_06455) - 1369732..1370514 (-) 783 WP_001168315.1 NAD+ synthase -
  LUA78_RS06465 (LUA78_06465) ilvC 1370763..1371755 (+) 993 WP_001207810.1 ketol-acid reductoisomerase -
  LUA78_RS06470 (LUA78_06470) minD 1371780..1372586 (+) 807 WP_001019051.1 septum site-determining protein MinD -
  LUA78_RS06475 (LUA78_06475) minE 1372583..1372816 (+) 234 WP_000051412.1 cell division topological specificity factor MinE -
  LUA78_RS06480 (LUA78_06480) dprA 1372828..1373628 (+) 801 WP_000841132.1 DNA-processing protein DprA Machinery gene
  LUA78_RS06485 (LUA78_06485) dprB 1373625..1374029 (+) 405 WP_000599187.1 Holliday junction resolvase RuvX Machinery gene
  LUA78_RS06490 (LUA78_06490) - 1374254..1375042 (+) 789 WP_171886539.1 tetratricopeptide repeat protein -
  LUA78_RS06495 (LUA78_06495) - 1375228..1375566 (+) 339 WP_000699883.1 hypothetical protein -
  LUA78_RS06500 (LUA78_06500) - 1375550..1376110 (+) 561 WP_001035884.1 hypothetical protein -
  LUA78_RS06505 (LUA78_06505) - 1376281..1377162 (-) 882 WP_001117208.1 RluA family pseudouridine synthase -
  LUA78_RS06510 (LUA78_06510) recJ 1377162..1378712 (-) 1551 WP_000810766.1 single-stranded-DNA-specific exonuclease RecJ -

Sequence

Protein


Download         Length: 134 a.a.        Molecular weight: 15121.57 Da        Isoelectric Point: 9.1542

>NTDB_id=636109 LUA78_RS06485 WP_000599187.1 1373625..1374029(+) (dprB) [Helicobacter pylori strain J99 derivative isolate D1]
MILACDVGLKRIGIAALLNGVILPLEAILRHNRNQASRDLSDLLRKKDIQVLVVGKPNESYADTHARIEHFIKLVDFKGE
IVFINEDNSSVEAYENLEHLGKKNKRIATKDGRLDSLSACRILERYCQQVLKKG

Nucleotide


Download         Length: 405 bp        

>NTDB_id=636109 LUA78_RS06485 WP_000599187.1 1373625..1374029(+) (dprB) [Helicobacter pylori strain J99 derivative isolate D1]
ATGATTTTAGCATGCGATGTGGGGTTAAAACGCATTGGAATCGCTGCGCTTTTAAACGGCGTTATCTTGCCTTTGGAAGC
GATTTTACGCCACAACAGGAATCAAGCCTCTAGGGATTTGAGCGATTTATTGAGAAAAAAAGACATTCAAGTGCTGGTGG
TGGGCAAACCCAACGAAAGCTATGCAGATACCCACGCCCGCATTGAGCATTTTATCAAGCTTGTAGATTTTAAGGGCGAA
ATCGTTTTTATCAATGAAGATAATTCTAGCGTAGAAGCTTATGAAAATTTAGAGCATTTGGGTAAGAAAAATAAGCGGAT
CGCTACCAAAGATGGCCGGTTAGACTCTTTGAGCGCTTGTAGGATTTTAGAGCGCTATTGCCAGCAGGTTTTAAAAAAGG
GCTAG

Domains

Predicted by InterproScan.

Holliday junction resolvase (RuvX)

(2-128)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q9ZMA5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprB Helicobacter pylori 26695

93.182

98.507

0.918