Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   PALA16_RS01945 Genome accession   NZ_CP106744
Coordinates   427195..428553 (+) Length   452 a.a.
NCBI ID   WP_023124962.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain PALA16     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 422195..433553
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PALA16_RS01925 (PALA16_00387) - 423032..423598 (-) 567 WP_003117889.1 hypothetical protein -
  PALA16_RS01930 (PALA16_00388) rsmD 423601..424197 (-) 597 WP_009875718.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  PALA16_RS01935 (PALA16_00389) - 424197..425684 (-) 1488 WP_016852367.1 M16 family metallopeptidase -
  PALA16_RS01940 (PALA16_00390) - 425677..427074 (-) 1398 WP_003084498.1 M16 family metallopeptidase -
  PALA16_RS01945 (PALA16_00391) pilA 427195..428553 (+) 1359 WP_023124962.1 signal recognition particle-docking protein FtsY Machinery gene
  PALA16_RS01950 (PALA16_00392) ftsE 428550..429221 (+) 672 WP_003084505.1 cell division ATP-binding protein FtsE -
  PALA16_RS01955 (PALA16_00393) ftsX 429221..430228 (+) 1008 WP_003084508.1 permease-like cell division protein FtsX -
  PALA16_RS01960 (PALA16_00394) rpoH 430342..431196 (+) 855 WP_003084510.1 RNA polymerase sigma factor RpoH -
  PALA16_RS01965 (PALA16_00395) - 431261..431644 (+) 384 WP_033952655.1 hypothetical protein -
  PALA16_RS01970 (PALA16_00396) - 431645..431866 (+) 222 WP_269972910.1 hypothetical protein -
  PALA16_RS01975 (PALA16_00397) mtgA 431871..432602 (-) 732 WP_003100972.1 monofunctional biosynthetic peptidoglycan transglycosylase -
  PALA16_RS01980 (PALA16_00398) - 432639..433016 (+) 378 WP_003084513.1 DUF423 domain-containing protein -
  PALA16_RS01985 (PALA16_00399) thiS 433119..433319 (+) 201 WP_003084514.1 sulfur carrier protein ThiS -

Sequence

Protein


Download         Length: 452 a.a.        Molecular weight: 48040.46 Da        Isoelectric Point: 4.5823

>NTDB_id=636100 PALA16_RS01945 WP_023124962.1 427195..428553(+) (pilA) [Pseudomonas aeruginosa strain PALA16]
MFGSNDDKKAPQGGEKKGLFGWWRKKPQAGEQPADQPVEPVSETAAAEQRAPADDVAQSLTEQPGRQQPSAAEPAEPAPV
AEAPLASGEPASAEEHSPRPEAPVAQPEPILAAEPEPEPEPEPEPEPVAPLAAAPAVSEPATRPGFFARLRQGLSKTSAS
IGEGMASLFLGRKEIDDDLLDDIETRLLTADVGVEATTLIVQNLTKRVARKELADSGALYKALQEELASLLRPVEQPLQV
DVAREPYVILVVGVNGVGKTTTIGKLAKKLQLEGKKVMLAAGDTFRAAAVEQLQVWGERNRIPVIAQHTGADSASVIFDA
VQAAKARGIDVLIADTAGRLHTKDNLMEELKKVRRVIGKLDETAPHEVLLVLDAGTGQNAINQAKQFNLAVELTGLALTK
LDGTAKGGVIFALAKQFGLPIRYIGVGEGIDDLRTFEADAFVQALFAERENA

Nucleotide


Download         Length: 1359 bp        

>NTDB_id=636100 PALA16_RS01945 WP_023124962.1 427195..428553(+) (pilA) [Pseudomonas aeruginosa strain PALA16]
ATGTTTGGTTCCAACGATGACAAGAAGGCCCCGCAGGGCGGGGAAAAGAAAGGTCTGTTCGGCTGGTGGCGGAAAAAGCC
GCAAGCCGGCGAGCAGCCTGCCGATCAGCCTGTCGAGCCGGTCTCCGAGACAGCGGCCGCCGAGCAGCGCGCGCCTGCCG
ATGACGTGGCGCAATCCCTGACAGAACAGCCAGGTCGGCAGCAGCCCTCCGCTGCCGAGCCGGCCGAGCCGGCGCCGGTT
GCCGAAGCACCGCTCGCCAGTGGCGAGCCAGCGTCGGCCGAGGAGCATTCGCCCCGGCCCGAGGCGCCCGTCGCGCAACC
CGAACCTATCCTGGCTGCCGAGCCCGAGCCCGAGCCCGAGCCCGAGCCCGAGCCCGAGCCCGTTGCGCCGCTGGCCGCCG
CTCCGGCAGTCAGCGAGCCGGCGACCAGGCCGGGCTTCTTCGCCCGCCTCCGGCAGGGACTGTCCAAGACCAGCGCCAGC
ATCGGCGAAGGCATGGCCAGCCTGTTCCTCGGCCGCAAGGAAATCGACGACGACCTGCTCGACGACATCGAGACGCGCCT
GCTGACCGCCGACGTCGGCGTCGAGGCCACCACCCTGATCGTGCAGAACCTGACCAAGCGCGTGGCGCGCAAGGAGCTGG
CCGACAGCGGCGCGCTGTACAAGGCGCTGCAGGAAGAGCTGGCCAGCCTGCTGCGCCCGGTGGAGCAGCCGTTGCAGGTC
GACGTCGCGCGCGAGCCCTATGTGATCCTGGTGGTCGGGGTGAACGGCGTGGGCAAGACCACCACCATCGGCAAGCTGGC
GAAGAAGCTGCAACTCGAGGGCAAGAAGGTCATGCTGGCCGCCGGCGACACCTTCCGCGCTGCCGCCGTGGAGCAGTTGC
AGGTCTGGGGCGAGCGCAACCGTATCCCGGTGATCGCCCAGCACACCGGCGCCGACTCCGCCTCGGTGATCTTCGACGCG
GTGCAGGCCGCCAAGGCCCGCGGCATCGACGTGCTGATCGCCGATACCGCCGGACGCCTGCATACCAAGGACAACCTGAT
GGAGGAGCTGAAGAAGGTGCGCCGGGTGATCGGCAAGCTGGACGAGACGGCGCCCCATGAGGTCCTGCTGGTGCTCGACG
CCGGCACCGGGCAGAACGCCATCAACCAGGCCAAGCAGTTCAACCTCGCGGTGGAGCTGACCGGCCTGGCCCTGACCAAA
CTGGACGGCACCGCCAAGGGCGGGGTGATCTTCGCCCTGGCCAAGCAGTTCGGCCTGCCGATCCGCTATATCGGTGTCGG
CGAGGGGATCGACGATCTCCGTACCTTCGAGGCCGACGCCTTCGTCCAGGCACTCTTCGCAGAGCGGGAGAACGCATGA

Domains

Predicted by InterProScan.

SRP54-type protein, helical bundle domain (SRP54_N)

(162-227)

SRP54-type protein, GTPase domain (SRP54)

(247-446)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Neisseria gonorrhoeae MS11

47.273

97.345

0.46