Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB2   Type   Machinery gene
Locus tag   LUA78_RS04940 Genome accession   NZ_CP089283
Coordinates   1043320..1043601 (+) Length   93 a.a.
NCBI ID   WP_001272691.1    Uniprot ID   K2KII6
Organism   Helicobacter pylori strain J99 derivative isolate D1     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1038320..1048601
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LUA78_RS04920 (LUA78_04920) groES 1038884..1039240 (-) 357 WP_000671934.1 co-chaperone GroES -
  LUA78_RS04925 (LUA78_04925) dnaG 1039528..1041207 (+) 1680 WP_000601572.1 DNA primase -
  LUA78_RS04930 (LUA78_04930) - 1041204..1042256 (+) 1053 WP_000809440.1 MnmA/TRMU family protein -
  LUA78_RS04935 (LUA78_04935) - 1042346..1043173 (+) 828 WP_001154969.1 DUF5718 family protein -
  LUA78_RS04940 (LUA78_04940) comB2 1043320..1043601 (+) 282 WP_001272691.1 TrbC/VirB2 family protein Machinery gene
  LUA78_RS04945 (LUA78_04945) comB3 1043601..1043864 (+) 264 WP_000584953.1 hypothetical protein Machinery gene
  LUA78_RS04950 (LUA78_04950) comB4 1043866..1046229 (+) 2364 WP_000890516.1 VirB4 family type IV secretion/conjugal transfer ATPase Machinery gene
  LUA78_RS04960 (LUA78_04960) - 1046538..1047878 (+) 1341 WP_001881006.1 COG3014 family protein -

Sequence

Protein


Download         Length: 93 a.a.        Molecular weight: 10511.76 Da        Isoelectric Point: 9.1450

>NTDB_id=636098 LUA78_RS04940 WP_001272691.1 1043320..1043601(+) (comB2) [Helicobacter pylori strain J99 derivative isolate D1]
MSAHFLKIVFLVGMCVSSLFAEGLEGFFNALEAQLKSPIAKGILMVIFIGIAIYVWRNLDRWKEILFTILGVVFGIFLFF
KAPSLANWFMGVF

Nucleotide


Download         Length: 282 bp        

>NTDB_id=636098 LUA78_RS04940 WP_001272691.1 1043320..1043601(+) (comB2) [Helicobacter pylori strain J99 derivative isolate D1]
ATGTCCGCTCATTTTTTAAAAATCGTTTTTTTAGTAGGCATGTGCGTTTCAAGTTTGTTCGCTGAAGGTTTAGAGGGGTT
TTTTAACGCTCTAGAAGCCCAGCTCAAAAGCCCCATCGCTAAGGGGATTTTAATGGTGATTTTCATAGGGATCGCTATTT
ATGTGTGGAGAAATTTAGACCGGTGGAAAGAGATTTTATTCACGATCCTTGGCGTGGTGTTTGGGATTTTTTTATTCTTT
AAAGCCCCGAGTTTGGCGAATTGGTTTATGGGAGTTTTTTAA

Domains

Predicted by InterproScan.

TrbC/VIRB2 pilin (TrbC)

(7-89)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB K2KII6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB2 Helicobacter pylori 26695

98.925

100

0.989