Detailed information    

insolico Bioinformatically predicted

Overview

Name   tsaP   Type   Machinery gene
Locus tag   PALA16_RS00120 Genome accession   NZ_CP106744
Coordinates   28011..29036 (+) Length   341 a.a.
NCBI ID   WP_003097294.1    Uniprot ID   A0A0H2ZJL6
Organism   Pseudomonas aeruginosa strain PALA16     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 23011..34036
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PALA16_RS00095 (PALA16_00019) - 23200..23517 (-) 318 WP_003120685.1 tetratricopeptide repeat protein -
  PALA16_RS00100 (PALA16_00020) trkA 23666..25039 (-) 1374 WP_003107053.1 Trk system potassium transporter TrkA -
  PALA16_RS00105 (PALA16_00021) rsmB 25066..26370 (-) 1305 WP_003122291.1 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB -
  PALA16_RS00110 (PALA16_00022) fmt 26367..27311 (-) 945 WP_010793609.1 methionyl-tRNA formyltransferase -
  PALA16_RS00115 (PALA16_00023) def 27366..27872 (-) 507 WP_003107059.1 peptide deformylase -
  PALA16_RS00120 (PALA16_00024) tsaP 28011..29036 (+) 1026 WP_003097294.1 LysM peptidoglycan-binding domain-containing protein Machinery gene
  PALA16_RS00125 (PALA16_00025) dprA 29171..30259 (+) 1089 WP_003118479.1 DNA-processing protein DprA Machinery gene
  PALA16_RS00130 (PALA16_00026) - 30300..30857 (+) 558 WP_016561457.1 L-threonylcarbamoyladenylate synthase -
  PALA16_RS00135 (PALA16_00027) - 30867..31844 (-) 978 WP_003097303.1 NADPH:quinone reductase -
  PALA16_RS00140 (PALA16_00028) hemF 32035..32952 (+) 918 WP_003097311.1 oxygen-dependent coproporphyrinogen oxidase -
  PALA16_RS00145 (PALA16_00029) aroE 33010..33834 (+) 825 WP_003111201.1 shikimate dehydrogenase -

Sequence

Protein


Download         Length: 341 a.a.        Molecular weight: 37586.01 Da        Isoelectric Point: 9.3358

>NTDB_id=636097 PALA16_RS00120 WP_003097294.1 28011..29036(+) (tsaP) [Pseudomonas aeruginosa strain PALA16]
MRKSLVALLLLAASGLAQAQVDLREGHPDRYTVVRGDTLWDISGKFLRQPWKWPELWHANPQIQNPHLIYPGDTLSLVYV
DGQPRLVLNRGESRGTIKLSPKIRSTPIAEAIPTIPLDKINSFLLANRIVDDEKTFTSAPYIVAGNAERIVSGTGDRIYA
RGKFADGQPAYGIFRQGKVYIDPKTKEVLGINADDIGGGEVVATEGDVATLALTRTTQEVRLGDRLFPTEERAVNSTFMP
GEPSREVKGEIIDVPRGVTQIGQFDVVTLNRGQRDGLAEGNVLAIYKVGETVRDRVTGESVKIPDERAGLLMVFRTYKKL
SYALVLMASRPLSVTDRVQNP

Nucleotide


Download         Length: 1026 bp        

>NTDB_id=636097 PALA16_RS00120 WP_003097294.1 28011..29036(+) (tsaP) [Pseudomonas aeruginosa strain PALA16]
ATGAGGAAATCACTAGTCGCCCTTCTGCTCCTTGCCGCGAGCGGTCTGGCGCAGGCCCAGGTCGACCTCAGGGAAGGGCA
TCCGGACCGCTACACGGTGGTCAGGGGCGATACCCTGTGGGACATCTCGGGGAAATTCCTCCGCCAGCCATGGAAGTGGC
CGGAACTCTGGCACGCCAACCCGCAGATCCAGAATCCACATCTGATCTACCCCGGCGACACCCTCAGCCTGGTCTACGTC
GATGGCCAGCCGCGCCTGGTGCTGAACCGTGGCGAATCGCGCGGGACCATCAAGCTGTCGCCGAAGATCCGCAGCACGCC
GATCGCCGAGGCCATCCCGACCATCCCGCTGGACAAGATCAACAGCTTCCTGCTGGCCAACCGCATCGTCGATGACGAGA
AGACCTTCACCAGTGCGCCGTACATCGTCGCCGGCAACGCCGAGCGGATCGTCAGCGGCACCGGCGACCGCATCTACGCT
CGCGGCAAGTTCGCCGACGGCCAGCCGGCCTATGGCATCTTCCGCCAGGGCAAGGTCTACATCGATCCGAAGACCAAGGA
AGTCCTCGGCATCAACGCCGACGACATCGGCGGCGGCGAGGTGGTGGCCACCGAAGGCGACGTCGCGACCCTGGCGCTGA
CCCGCACCACCCAGGAAGTGCGCCTGGGCGACCGCCTGTTCCCCACCGAGGAGCGTGCGGTGAATTCCACCTTCATGCCC
GGCGAGCCGAGCCGCGAGGTGAAGGGCGAAATCATCGACGTACCGCGCGGCGTGACCCAGATCGGCCAGTTCGACGTGGT
CACCCTGAACCGTGGCCAGCGCGACGGGCTGGCCGAGGGCAACGTGCTGGCGATCTACAAGGTCGGCGAGACGGTGCGCG
ACCGCGTTACCGGTGAGTCGGTGAAGATTCCCGACGAACGCGCCGGCCTGCTGATGGTGTTCCGTACCTACAAGAAGCTG
AGCTACGCCCTGGTTCTGATGGCCAGCAGGCCGCTCTCGGTAACCGACAGGGTGCAGAATCCCTGA

Domains

Predicted by InterProScan.

LysM domain (LysM)

(31-76)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2ZJL6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tsaP Acinetobacter baumannii D1279779

36.512

100

0.393