Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   LUA78_RS04190 Genome accession   NZ_CP089283
Coordinates   883694..884269 (-) Length   191 a.a.
NCBI ID   WP_001203557.1    Uniprot ID   Q9ZJE6
Organism   Helicobacter pylori strain J99 derivative isolate D1     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 878694..889269
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LUA78_RS04180 (LUA78_04180) - 880409..881629 (-) 1221 WP_000580077.1 restriction endonuclease subunit S -
  LUA78_RS04185 (LUA78_04185) - 881626..883662 (-) 2037 WP_001045380.1 N-6 DNA methylase -
  LUA78_RS04190 (LUA78_04190) comFC 883694..884269 (-) 576 WP_001203557.1 ComF family protein Machinery gene
  LUA78_RS04195 (LUA78_04195) tmk 884257..884832 (-) 576 WP_000289745.1 dTMP kinase -
  LUA78_RS04200 (LUA78_04200) coaD 884836..885309 (-) 474 WP_001169238.1 pantetheine-phosphate adenylyltransferase -
  LUA78_RS04205 (LUA78_04205) - 885309..885872 (-) 564 WP_000780089.1 UbiX family flavin prenyltransferase -
  LUA78_RS04210 (LUA78_04210) flgA 885882..886538 (-) 657 WP_000699043.1 flagellar basal body P-ring formation chaperone FlgA -
  LUA78_RS04215 (LUA78_04215) uvrD 886535..888580 (-) 2046 WP_000505267.1 DNA helicase UvrD -

Sequence

Protein


Download         Length: 191 a.a.        Molecular weight: 21307.81 Da        Isoelectric Point: 8.8914

>NTDB_id=636097 LUA78_RS04190 WP_001203557.1 883694..884269(-) (comFC) [Helicobacter pylori strain J99 derivative isolate D1]
MRCLTCLKLSFKPLCPNCLNDLPLSLKLRVLEGVSVYSFYAYSEIEELIKSKYALIGSRILPLLSQKAGAEFVKILQEQG
LNTPLYGIAIDDKIKSFYSHSAALLKGFCQGNLKATYGRLRANNAVSYAGKSLEFRANNPRNFTFRGDESLDYFLLDDII
TTGTTLKEALKYLKTLNIKAHFAIALCSADE

Nucleotide


Download         Length: 576 bp        

>NTDB_id=636097 LUA78_RS04190 WP_001203557.1 883694..884269(-) (comFC) [Helicobacter pylori strain J99 derivative isolate D1]
ATGCGTTGTTTAACCTGTTTGAAGCTTTCCTTTAAGCCCCTTTGCCCAAATTGCCTGAACGATTTGCCCTTAAGCTTAAA
GTTAAGGGTTTTAGAGGGCGTGAGCGTGTATAGTTTTTACGCTTATAGCGAAATAGAAGAGCTTATTAAAAGCAAATACG
CGCTGATTGGCTCTCGCATTTTACCCTTGCTTTCTCAAAAAGCCGGCGCGGAATTTGTGAAAATCCTGCAAGAACAAGGC
TTGAATACCCCCCTTTATGGCATCGCCATTGACGATAAAATCAAATCCTTTTACTCGCATTCCGCCGCGCTTTTAAAAGG
CTTTTGTCAAGGGAATTTAAAAGCCACTTACGGGCGTTTAAGGGCTAATAATGCTGTTTCGTATGCCGGGAAAAGCTTAG
AATTTCGCGCCAATAACCCACGGAATTTCACTTTCAGGGGCGATGAAAGTTTAGATTATTTCTTGCTAGATGATATTATC
ACCACCGGCACCACCCTAAAAGAAGCCCTAAAATACCTTAAAACCCTAAACATCAAAGCGCACTTTGCGATCGCGCTTTG
CAGCGCGGATGAATGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q9ZJE6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Helicobacter pylori 26695

97.382

100

0.974