Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEC/comE3   Type   Machinery gene
Locus tag   LUA78_RS03725 Genome accession   NZ_CP089283
Coordinates   783263..784576 (-) Length   437 a.a.
NCBI ID   WP_000653637.1    Uniprot ID   -
Organism   Helicobacter pylori strain J99 derivative isolate D1     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 778263..789576
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LUA78_RS03695 (LUA78_03695) nadC 778726..779547 (-) 822 WP_000404063.1 carboxylating nicotinate-nucleotide diphosphorylase -
  LUA78_RS03700 (LUA78_03700) nadA 779547..780557 (-) 1011 WP_001141872.1 quinolinate synthase NadA -
  LUA78_RS03705 (LUA78_03705) - 780547..781350 (-) 804 WP_000226231.1 phosphatidylserine decarboxylase -
  LUA78_RS03710 (LUA78_03710) - 781344..781850 (-) 507 WP_000953123.1 DUF6115 domain-containing protein -
  LUA78_RS03715 (LUA78_03715) - 781863..782357 (-) 495 WP_046656151.1 hypothetical protein -
  LUA78_RS03720 (LUA78_03720) mqnP 782350..783192 (-) 843 WP_230078047.1 menaquinone biosynthesis prenyltransferase MqnP -
  LUA78_RS03725 (LUA78_03725) comEC/comE3 783263..784576 (-) 1314 WP_000653637.1 ComEC/Rec2 family competence protein Machinery gene
  LUA78_RS03730 (LUA78_03730) - 784573..786033 (-) 1461 WP_000349702.1 replicative DNA helicase -
  LUA78_RS03735 (LUA78_03735) - 786044..787438 (-) 1395 WP_000953985.1 NAD(P)H-hydrate dehydratase -
  LUA78_RS03740 (LUA78_03740) crdS 787441..788643 (-) 1203 WP_079993037.1 copper-sensing histidine kinase CrdS -
  LUA78_RS03745 (LUA78_03745) crdR 788609..789250 (-) 642 WP_001169735.1 copper response regulator transcription factor CrdR -

Sequence

Protein


Download         Length: 437 a.a.        Molecular weight: 50204.10 Da        Isoelectric Point: 9.8459

>NTDB_id=636095 LUA78_RS03725 WP_000653637.1 783263..784576(-) (comEC/comE3) [Helicobacter pylori strain J99 derivative isolate D1]
MKDKTFQGAFELLTTPKEYSWCGVVLSLLLAINLYLEYLNHQKLDFSKPTSLNAQILLQYPKTKDQKTYFVLKLQSKGMI
FYTTIKEPLKNLQYRYAQFFGKIKPCSFLESLKSCFFQTYSFSLTRKQDFKSHLRHFIDSAHSNALVGNLYRALFIGDSL
NKDLRDRANALGINHLLAISGFHLGILSASVYFLFSLFYTPLQKRYFPYRNAFYDIGVLVWVFLLGYLLLLDFLPSFFRA
FLMGLLGFLACFFGVRILSFKLLVLACCIAIALLPKLLFSVGFLLSVCGVWYIFLFLKHTQIFFKDSSFFKRSFQAIALS
VLVFLNMLIVAHAFFPMFSPYQLFSIPLGLIFIVFFPLSLFLHAVGLGSLLDNILSMPLTIPTISVSSPLWLLGAHLFLT
ILSVRFFKVYLSMNVLSMGFFLYCCYQYIIMPSLIVG

Nucleotide


Download         Length: 1314 bp        

>NTDB_id=636095 LUA78_RS03725 WP_000653637.1 783263..784576(-) (comEC/comE3) [Helicobacter pylori strain J99 derivative isolate D1]
TTGAAAGATAAAACCTTTCAGGGGGCGTTTGAACTTCTTACGACCCCCAAAGAATACTCATGGTGTGGGGTTGTTTTAAG
CCTTTTGTTGGCGATTAACCTTTATTTAGAATACTTGAATCACCAAAAGCTTGATTTTTCAAAACCTACAAGCTTGAACG
CTCAAATCTTATTACAATACCCTAAAACGAAAGATCAAAAAACCTATTTTGTCTTAAAACTCCAATCTAAGGGCATGATC
TTTTACACCACCATTAAAGAGCCTTTAAAAAACCTCCAATACCGCTATGCGCAATTTTTTGGCAAGATCAAGCCTTGTTC
GTTCTTAGAGTCTCTAAAATCATGCTTTTTTCAAACCTATTCTTTTTCTTTAACGCGAAAACAAGATTTCAAATCGCATT
TGCGCCATTTCATTGACAGCGCCCATTCCAACGCCTTAGTGGGTAATTTGTATCGAGCGTTATTCATAGGGGATAGCTTG
AATAAAGACTTAAGAGACAGGGCTAACGCGCTAGGGATCAACCACTTACTGGCCATTAGCGGGTTTCATTTAGGGATTTT
GAGCGCGAGCGTGTATTTTCTTTTCTCTCTTTTTTATACCCCCTTACAAAAACGCTATTTCCCTTACAGGAACGCTTTTT
ATGATATAGGGGTTTTGGTGTGGGTTTTTTTGCTGGGGTATTTATTGCTATTAGATTTTTTACCCTCTTTTTTCAGGGCG
TTTTTAATGGGCTTATTAGGGTTTTTGGCATGCTTTTTTGGGGTAAGGATTTTGAGTTTTAAACTTTTGGTTTTAGCGTG
CTGTATCGCCATAGCGTTACTCCCTAAATTGCTTTTTAGCGTGGGGTTTTTGCTTTCTGTTTGTGGGGTGTGGTATATCT
TTTTGTTTTTAAAACACACTCAAATTTTTTTTAAAGATTCTTCTTTTTTCAAGCGATCGTTTCAAGCGATCGCTTTAAGC
GTGTTAGTGTTTTTGAACATGCTCATTGTTGCGCATGCCTTTTTCCCTATGTTTTCGCCCTACCAGCTCTTTAGCATTCC
TTTAGGCTTGATTTTTATCGTGTTTTTCCCTTTGAGCTTGTTCTTGCATGCGGTGGGTTTAGGGTCTTTATTGGATAATA
TTCTAAGCATGCCTTTAACCATCCCCACGATTTCGGTTTCTTCGCCTTTATGGCTTTTGGGGGCGCATTTGTTTTTAACG
ATTTTAAGCGTGCGTTTTTTTAAGGTTTATTTAAGCATGAATGTTTTGAGCATGGGCTTTTTCTTGTATTGTTGCTATCA
ATATATTATAATGCCTAGTTTAATTGTGGGTTAG

Domains

Predicted by InterproScan.

Competence protein (Competence)

(159-416)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEC/comE3 Helicobacter pylori 26695

94.05

100

0.941